BtaEX0041411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004939 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr18:47639304-47646133:-
Coord C1 exon
chr18:47644858-47646133
Coord A exon
chr18:47642967-47643125
Coord C2 exon
chr18:47639304-47639361
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTCAAATTTCTTTTCCAGGTT
3' ss Score
11.65
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CGACTCAGTGGTGCTTCCTTCACGGACCAGATACAATAACGCCGAGAACCCGAAGATACACCAACTGCACGGAGCAAGAGACTTTTTGCGGAAAATAGATTTGGACCGAGGAGGCCTCTGGGAAATGTAGTTCTGGGCAGCAAAACCGCGGACCTTTTCAGATTCTCCTTAGCACCAAGTAGCACTCCCAGGCTCCGAGTGCCAGACTCATGGGAGGCAGCTTCTGCAAAACTCAGCTGAGGTCCCTCGGCCGATCTGAGAGCCCCTCCACGGTGCGGTGGGTCATTCCGGTTACCCCGACAGCGGGAGGGCCAGTCCCTCCTCCGCGAGCCGCGGGGGCCTCTGGGAAGAGTTAGCTGCATCTAACGGACCTGGGCTGGTGCTGCCTACCGCCACAGTCGGCGCTGACCTGAGTGGCACCCCTCCCTGGGGCCGCACCGGCTGTGCCACTCGGGCGGTGTTGAGGTGTGGAACTGTGGCCTGTGTCTGCGGGCTTGCCG
Seq A exon
GTTCTTCAGGTATTATGGATTTATTCATTCATCTACTCACCATTTATTGAATGCTGCATGTGACAGGAGTTAAAAGATGCTTGGGATATAGCATTGAACAAAGTAGACAGACTCTGCTATCATGGTACTTAAATTGTTGTGGGTCAGATAATAAGGGGG
Seq C2 exon
CTCTGCCTTCTCAGGCTCAGTCCATTCCCAGAAAGAAGAGGAAATGAATGAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004939_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGGTCATTCCGGTTAC
R:
TTCTGGGAATGGACTGAGCCT
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development