HsaEX0073964 @ hg19
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:24737]
Coordinates
chr19:37935809-37958339:-
Coord C1 exon
chr19:37957986-37958339
Coord A exon
chr19:37956215-37956375
Coord C2 exon
chr19:37935809-37935866
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTTCAAATTTCTTTTCCAGAGT
3' ss Score
9.98
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCAGCGGAACGATTCGATTCTTCTCAGCACCAAGTTGCGCTCCCAATCTCTCAGAGCTGGGCTCGCGGGAGGCCGCTCGTGCAAAACCTAGGCTGAGCTCCCCTGCGCGGAGCTGTGAGCCCTGGAACACCGTGGTCTGCTTCTCAGGACGCGCAAACAGTGAAGCCAGTCCCGCCCGGGTGAGCCGCGGGGGCCTCTGGGAAGCGTCGCCCCTGGTGTAACGGACCGAGACTTGTGGCGCTCTCAGCCACCGACAGCGCCGGCCTCAGTGCCGCCTCTGTCCCAGCCCGCGCCGGCTCTGCCACTTTGGCAGCGTTAAGTGTGGAATCGGGGCCTGTGTCCGCGGGCTTGGTG
Seq A exon
AGTTCTTCATATATTAAGGATTCATTCATTCATAGACTCATTTATTGAAGGCTGTCTGTGTAACAGGCACAATCCTAGGTGCTTGGGATATAGCAGTGAACAAGAGACAAACCCCCTACTATCATGGTACTTACATTTTTGTGGGCTGGATAATAAACAAG
Seq C2 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-3/8=1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0173211=DUF31=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACCGTGGTCTGCTTCTC
R:
GATGGGGCCTGCAGAAGTAGA
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)