HsaEX0073965 @ hg19
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:24737]
Coordinates
chr19:37935809-37956375:-
Coord C1 exon
chr19:37956215-37956375
Coord A exon
chr19:37945736-37945975
Coord C2 exon
chr19:37935809-37935866
Length
240 bp
Sequences
Splice sites
3' ss Seq
GACTTTGGGTTTCTCCTTAGGGA
3' ss Score
9.65
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
AGTTCTTCATATATTAAGGATTCATTCATTCATAGACTCATTTATTGAAGGCTGTCTGTGTAACAGGCACAATCCTAGGTGCTTGGGATATAGCAGTGAACAAGAGACAAACCCCCTACTATCATGGTACTTACATTTTTGTGGGCTGGATAATAAACAAG
Seq A exon
GGATGTAAACAGCTGGAAAGAACTTTGCTTCAATCATTACAACAAGGAAACTACAAACTTCTACCGTACAACAAGGAAATGGACAAACTACAAAATAATTTTTCTAGGACCCTTCAGAGAACTGAGGTCACAGGGCAACCAAGTAATCTTAAATCTGGGGAAAGAAAGATGCCAGCTGAGAGAAACAGGACTCAAGCTTTACTTACCTGGGATGGACTCTGCCAGACACCATATAAGCCA
Seq C2 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-4/8=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
PF0173211=DUF31=PU(2.3=40.0)
C2:
PF0173211=DUF31=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGACTCATTTATTGAAGGCTGT
R:
CTGGGACTCAGTCATTTCCTCT
Band lengths:
190-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)