HsaEX0073963 @ hg19
Exon Skipping
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:24737]
Coordinates
chr19:37956215-37958339:-
Coord C1 exon
chr19:37957986-37958339
Coord A exon
chr19:37957641-37957706
Coord C2 exon
chr19:37956215-37956375
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTTTTATCTTTCAGTAT
3' ss Score
11.31
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCAGCGGAACGATTCGATTCTTCTCAGCACCAAGTTGCGCTCCCAATCTCTCAGAGCTGGGCTCGCGGGAGGCCGCTCGTGCAAAACCTAGGCTGAGCTCCCCTGCGCGGAGCTGTGAGCCCTGGAACACCGTGGTCTGCTTCTCAGGACGCGCAAACAGTGAAGCCAGTCCCGCCCGGGTGAGCCGCGGGGGCCTCTGGGAAGCGTCGCCCCTGGTGTAACGGACCGAGACTTGTGGCGCTCTCAGCCACCGACAGCGCCGGCCTCAGTGCCGCCTCTGTCCCAGCCCGCGCCGGCTCTGCCACTTTGGCAGCGTTAAGTGTGGAATCGGGGCCTGTGTCCGCGGGCTTGGTG
Seq A exon
TATGAACCTGCGTGCAAACGTGCATGACAGTGGGATCTTGAATGAATGAAAAACTGTGGATACAAG
Seq C2 exon
AGTTCTTCATATATTAAGGATTCATTCATTCATAGACTCATTTATTGAAGGCTGTCTGTGTAACAGGCACAATCCTAGGTGCTTGGGATATAGCAGTGAACAAGAGACAAACCCCCTACTATCATGGTACTTACATTTTTGTGGGCTGGATAATAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437_MULTIEX1-2/8=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGCAGCGTTAAGTGTGG
R:
AGGGGGTTTGTCTCTTGTTCAC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)