RnoEX0048414 @ rn6
Exon Skipping
Gene
ENSRNOG00000046937 | LOC103690038
Description
zinc finger protein 569 [Source:RGD Symbol;Acc:9235705]
Coordinates
chr1:87825274-87841460:-
Coord C1 exon
chr1:87841360-87841460
Coord A exon
chr1:87839490-87839666
Coord C2 exon
chr1:87825274-87825374
Length
177 bp
Sequences
Splice sites
3' ss Seq
AGGGAGTGTTCTGTTTTCAGCTT
3' ss Score
5.11
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CGAGCTGTGGCCACTCTCCCGGCTCGCACACAGAAGGCCAGACCTGCCCGGCGAGCCGCGGGGCCCTCTGGGAAGTGCTACCCTGCGTCTAACGGACCCAG
Seq A exon
CTTTCGTTGTCAGAATTCTTCCTGCGCTGAGGAACCTTTTAGAAGCTCAATATTTACTGAAGGTTGGACATATATCAGTCAGTTGTTGGTGCGCTGGATCCTGCAGTGAACAGAGGAATCGGCCCCCTCTCCCTCGGCTAATCAGGATGCCGACGTTGCTGTGGAGTAGATAATAAA
Seq C2 exon
CTCAGCTTGCTCAGGACGTCCCTCCCTAAAAAGAAGAGGAAATGACCGAGTCTGAGGTAAATATTAAACGTTCTCTCATCCTCTGCTTCTTCTACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046937-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTGTGGCCACTCTCC
R:
CTGCATGTAGAAGAAGCAGAGGA
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]