HsaALTD1041530-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000196437 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr19:37444907-37467208:-
Coord C1 exon
chr19:37467087-37467208
Coord A exon
NA
Coord C2 exon
chr19:37444907-37444964
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGTG
5' ss Score
-7.31
3' ss Seq
ACTTTTATTCTCTTCCCCAGCTC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GACTTGTGGCGCTCTCAGCCACCGACAGCGCCGGCCTCAGTGCCGCCTCTGTCCCAGCCCGCGCCGGCTCTGCCACTTTGGCAGCGTTAAGTGTGGAATCGGGGCCTGTGTCCGCGGGCTTG
Seq A exon
NA
Seq C2 exon
CTCTACTTCTGCAGGCCCCATCCCTTCCCAGAAAGAAGAGGAAATGACTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196437-2-14,3-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.875
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTTGGCAGCGTTAAGTG
R:
TCCTCTTCTTTCTGGGAAGGGA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains