MmuEX0053592 @ mm10
Exon Skipping
Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:29937942-29951893:-
Coord C1 exon
chr7:29951714-29951893
Coord A exon
chr7:29943491-29943545
Coord C2 exon
chr7:29937942-29938068
Length
55 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGTTCTTTTTGCCAGTTC
3' ss Score
9.34
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CAGCTCTCATTTTCAGAGTTCTTCCTGCGCTGAGGAGCCTTTTATAAACTCAATATTTATTGAATGTTGGACATATATCAGTCAATTGTTGGTGTGTGGGATATAGCAGCGAACAAAAGAAGCAGTGACCCCCCCCCCTCTCATGATGCTTACATTGCCGAGGACCAGATAATAAACAAA
Seq A exon
TTCAGCTTGCTCAGGACCTCCCCCCTAAAAAGAAGAGGAAATGACCGAGTCTGAG
Seq C2 exon
GGACTAGTGACGTTCAAAGACGTGGCCATTGATTTTACCCAAGAAGAATGGAAGCAACTGGATCCTACTCAGCGGAACCTATATAGGAATGTGATGCTAGAAAACTACAACAACTTAATCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975-'1-10,'1-7,4-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGAAGCAGTGACCCCC
R:
AGGTTCCGCTGAGTAGGATCC
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types