MmuEX0053592 @ mm9
Exon Skipping
Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:30722961-30739106:-
Coord C1 exon
chr7:30738874-30739106
Coord A exon
chr7:30728510-30728564
Coord C2 exon
chr7:30722961-30723087
Length
55 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGTTCTTTTTGCCAGTTC
3' ss Score
9.34
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGGATCCTTTCGGATTCTTCTCAGTTGCAAGTTGCACCCCCAGGCTGTGAATGCCAGGCCGCGGGGTAGCCGCTGCTACAAAACCCGCCCAGGCTCAAGCCGGTCCCCCTGCCGCAGCGCCGCGCCCTTACCCGAGCCTTGGCCACTCTCCTGACTCGCACGCCGAAGGCCAGACCCGCCCGGCGAGCCGCGCGGCCCTCTGGGAAGTGCTACCCTGCGCCTAGCGGACCCAG
Seq A exon
TTCAGCTTGCTCAGGACCTCCCCCCTAAAAAGAAGAGGAAATGACCGAGTCTGAG
Seq C2 exon
GGACTAGTGACGTTCAAAGACGTGGCCATTGATTTTACCCAAGAAGAATGGAAGCAACTGGATCCTACTCAGCGGAACCTATATAGGAATGTGATGCTAGAAAACTACAACAACTTAATCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCCACTCTCCTGACTC
R:
TGGGTAAAATCAATGGCCACGT
Band lengths:
138-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: