BtaEX0041433 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65645367-65653639:-
Coord C1 exon
chr18:65653541-65653639
Coord A exon
chr18:65652162-65652228
Coord C2 exon
chr18:65645367-65647339
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTGTTTCCTCCAGCAC
3' ss Score
10.28
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAATCAGATCACCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCATGGTCAATGGAACCAGCATATCCTCTTCAAGGCACTTGTCCAG
Seq A exon
CACCAGAAATATGGGATGTTATTTTCCAAGGCTACTGCTGAGTTGAGGAGTCAGAGATGGGATTAGG
Seq C2 exon
AATGGATGAAAAATCTTGAAAGCAAAGCATTGATCCCAACACAGAGCATACTTGAGGAGGAACAGTCCCATAGCATGAAGTTGGAGAGATACATATGGGATGATCCTTGGTTCTCCAGGTTAGAAGTTTTGGGATGTAAAGACCAATTAGAAATGTATCACGTGAACCAGAGTACAGCTATGAGGCAGATGGTCTTCATGCAAAAGCAGATACTATCTCAAAGAGGCTCTGAGTTCTGTGAACTTGGAGCAGGGTGTAGCCAGAGCTTAAACATTGTTCCATCTCAGAAAGTTTCTCAAGTAGAACATTTCTATAAGCCTGATGTAAATGCTGAAAGTTGGAGATGTAACTCAGCCATAATGTATACTGATAAGATTACCTGTGAAAATAATGAGTATGACAAAGCCTTCTACCAGTCCATGCAGCCTGTTCACCCTGCAAGGGTACAAACTGGAGATAATCTTTTAAAATGTACTGATACTGTTAAATCTTTCAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF079757=C1_4=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
ENSBTAT00000004486fB8033
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACCAAGCCTGAGGTCA
R:
TGCTATGGGACTGTTCCTCCT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development