BtaINT0165789 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65645367-65653639:-
Coord C1 exon
chr18:65653541-65653639
Coord A exon
chr18:65647340-65653540
Coord C2 exon
chr18:65645367-65647339
Length
6201 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACTTTTTCTATTTATTTCAGAAT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GGAATCAGATCACCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCATGGTCAATGGAACCAGCATATCCTCTTCAAGGCACTTGTCCAG
Seq A exon
GTGAGAGCAGGCCCCAGGTGGGAGTGCGGAACCTTCCTCCAAGCCCTACTTTTTGAGAAAAGGGCTGAGGCCATGAAGAGTTCACTTCCTCAGAAAGCATCACAGTTCCTTCCAAGAAGCTTCATCCCTTGTACTATTTTCAGAGCAAAAATGCCCACCTTCTTAACAAGGTAGCAATTTTTGTATCCTGCAGTTTCCCTCCTTACCTCTCATATTATCTGCTGTCCCTTTTGTCTAAAAAGACTTCTCATTCAGTTACCTGCTTTTTAATTTTTTATTGCAAAACTTGTATCCTTGTAGTCACAGACTCTTCTTTCCAAAAAAAAAAAGTATCAAAAAGTGATTGTTTAATACAGATAATGTATCTACATGATTTAAAAACTCAAAGCTATATAAAATGGGTAAGTGAAAGGAAGTTTCATTTATACTTATTCACACTGTTCTTATCCTCCAAAGAGACACACAGAAACACACACAGGTAACCCCTTTCCTTTTACTATAAATTTTTGGTTATTTTACTAGTGGTTGTCCTGGGAATTATAATTAACATCTTAATTTGCAGCAGTTTAGTTTGGATTTTATGTAATTGTCTTTTAAATCAGATAGGAAACAAATAAAAATGCAGTTATACAGTCTTGGATTTTCCCAAGTAGTTACCTTTATTGGTGGTCTGTATTTTGAGTTATTGTCTTTTCATTTCAGTCTGAAGAACTCCTTTTAGCATTTCTCATACGGCAGCTTTACTAGCAAACTCTTACCTTTTGTTTTATCAGGGAAGGTCTTGATTTCTCTATTTTTGAATGATAGTTTTGCCAGGTATAGGATTTGTGGTTGACACATTTCTTCTTTCTGTCCTCCCTGGTTTCTGATGAGAAATAAGCTGTTAATCTTGTTGAGGATCCCTTGTGTGTGATGACTTGCTTCTCTCTCGTTGCTTTCTTTGACTTTTGAAAATTTAACTACAGTGTATATATATGTGGCCTTCTAGATTCCCAGGAATATGTTAGAACTTTTCAAAGCTCCTATGCATATCTCACTCTTCAGCTTTTCCTTTCATTTTTTGGTTAGTATATCGTTTGCCCCAACTATTTTGCATCATCTCGGACAGTAATTAAAAAAAAAAAAAGACTTCTTAAAACTTGGCCTGGAAATGTTTGACAGATCCCTACTTCCTGGAAGCTTTTAGCACTGTGCAAGTTCCCACAAGTCTTTCAAGTGGGATCTTTCTGGGAATCACCAAACAGCTCAGATAATGACTATTCTTTGGGAGTGAGGCTTTGAAAAAGCTCTAGCTTTGTTCTGTTTCCTCCAGCACCAGAAATATGGGATGTTATTTTCCAAGGCTACTGCTGAGTTGAGGAGTCAGAGATGGGATTAGGGTAAGTTAAAATGCTACAAATCTGTTACTATCAAAATTAACTATTCTCCTTGAATAAACTCTCTCTGGGTCACTGCACAGCTTTGGTTAAGCATATAGACACAATAGTTACTTTTCACCTTTCCAAAGGTGAAATACAGTACACATTGTTCTGTATTTTGTTATTTTTAATTTAACAATATACTGTGCTCTCTCTTGAGTCCTAAAGGTGGACATCTTCCTGTCCACTCTAATGAAGTGGGCTTTTGTGGGGTCTTACCTGTTGCCCCCATCTGGATCTGAAAGCCTGTACCAAGGCGTCATAATTTCCGGTAGCTTTTATGTGCTGACCTTTCTGAGTAATCATCCTGAGCCCTGTGGTTCCACCAGCTCCAGCTTTACACTTCTGCCTTCTTGCAGATCATCTCAGCTGTCTCCTTGATACTGATAGAACCAGGAATCTCACTTTCCCTTCTGGCTGGTGTCCCCGTCTTCCTGATGTGTATTCCTTGTTCAGCCTTCTGTGAATCCCCGGAGCTGGAAATGGGAAGGTCATCCTGACTCCCTGTTCTTTCCTTTCTAAGAAGGAATCTCTCTTCTCATCCAGCTCAAGTTGCTGAGTAAATTTTATTTGTTATGAGCCTCTCAGGTGGTATTTCTAGATTTACATCCCTGAAGTCTTCCATTAAGAGGCCTCTGCCAGTAAATCTACAATGACTTGGATTACCTTTTAAATAACGGACTCAATTTCAAGACCTTCCTATTTTCTCTCTTTTCTTTTTCTCTTGTTATTTCCTGCCTAATTCCTGGAGTTTACTCAGCTGGCATCCTTAAGGATGTGTGATGCCTTTGCTCATCACAGCTTGCTTCTGCTTGTGCCATTCTGGCAGTCTGTATTTGAGCCATGCTCGAAGGCTGAGCTCATGTCGTTTCTTGTGGGTGAAACCTTCCTGGATGGCTTCTGTCATGCTGATCTCCTTTTCTGGCCTCCCACCTGCTTAGCATCTACAGCCCCACAGTCACAGTGATGTATAGTGTTTCGATTGTCCTTTCATCACAGAGATTATAATTTACAGGTGGAAGATATGCTCAGGCCACAAATACTGGTTGTAAAGCTGGTCCGAAATTGTTTGGTCAGTGACTTGGTCAGCTACCATTTAAAAAAGTTTTTTACTGGGAAAATTCAAAAGCTATTTGAAGATCATTCCCAGACTTCTGGGGCTTCCCTGGTGGCTCAGCAGGTAAAGAACCTGCCTGCCAATGCAGGAGATGCAAATTTGATCCCTGGGTCGGGAAGATCCCCTGGAGGTGGAAGTGCAACCCACCCCAGTGTACTTGCCTGGGAAATCCCATGTACAGAGCAACCTGGTAGTCCATGGGGTCACAAAAAATTGGACACAACTGAGCACAAAGAGGGACTCTCTAACTTCTAGGAGCGAAGCTTAAAATTGATAATAAATGCCAGTTCTTTAGCAGAGTAGAATCTCTCTCTCTTGTAATGGACTTGGGTAGTAAAAGGGGAAAATAGTATATAGTGAAGAAAGCATAAAAACCTGAAGAAAACCAGGGTCTAGGTCCATATTGGGTTCCTGTAGCTTTTAGACACTGTGGTATGTTGAATAATGATACCCTCCTCCCTCCACAAAATGTCCACATCCAAAGCTGAATATGGTGCTTTATGTGGCAAAAGTGGCTTTTCAGATGTGAGTTAAACTAGGAATCTTTTGAGATGCAAAGATTATCTTGGATTGTCCAGATGGACCCATTGTAATCATGAGATCCTTAGAAGAGTGAGTATCAGAGACACCGATATGATTGACAGAAGTAGAGATAGGAATAATATACTTTGAAGATAGAAAGAGGAACTACAAGTCAAAGAATGCAGGCAGCTTTTTAAAGCTGGGAAAAGCAAGGATATGGATTCTCCCCTAGAGCTTCTGAAGGAAAGCTATTTTGATTTTAGCCCAGTGAAAGCCGTTTATAGCCTCTGACTTTCAGACTGTGAGATGGGTGATTTGTTATAGCAGCAATAGGAAACTAGGAAACACCCTTCCGTTGCTGGAGGACTGATAACTCAGGGTGATGATAGGTGGCTTCCACGTATTGAATTTGCCAGACATTTTGTTGGTTTTACAATCTCATTTAATCTTTGGAAAACTCACCTAAGGAGAGTGGCAGAGCCAGTAATTAAATACAGATTATCAGACTGTAACTCCTGTACCTTTTTCATTGCAGTATTCTGTCTTTCAAGTCTGTCTCTTCTGCCATCACTCTACAAATTATTCTGCAGTGTTAAAAGAACTTTAGGAGTATCCTTAAACTTTGTGATTTTTGCCCTTTGGGCAGATGGTTTTGTGTTACTGAGTGAACTCTGTGGAATAGGAAATAAGGCTTGACGCCTTGTTGGTGATACTTTCACTTAACACCCCTCCTTTTTTTGGTAGGTGTCAAAATAGGAGAGCAATAGGACATTATAACATAGAAATTAATTGACATGCTTTAATAATTTAAATATTAGTTGCTGAGGGGCTGCTTGTTCATATGTCTTTTGCTTAACCAGTTGTTATTTTTTCACCTTAGTAGTATTGAATGTGTCAGGATCCTCCAGACACCCCCCCACCTCCGCACCAACTTCAGTAATTCTCTGGAAGTACACACTGGACTCAGAAGGCATTAAACTCAGGGTAGTGGATTGTTACAGTGAAATAATACAGAGCAGCATCAGCAGAGGGTAAGGTGTGTGGCGCCAAGTCCAGAGGAAACCAAGTGCAGGTTTTCAGTAGTCACTTGTTCTGGTCGTCCTTTACACGGGGAATGTTCCTCAATGGGTTTATTCATATTCATTACGCGTTTTGTAGTCACTTATTCTGGTCCTCCTTTACATGGGGAACGTTCCTCAATGGGTTTATTCATATCCATTACACGTTTTGTTTTCTACTTAACTACTTACGCTCACTCTTTACTATTTTCCTCTTTCTTGTTGTGATGTTTCTCTGGGTTACCAGTCTGTTTGGAAACAAGTTCACAGTTGCCTTTTCAATAACATGGACAATAAATCTTACCTTGTCCACCCTACTCTTAGAATTTGTTTCTCTATACTCTCATGGACTTTTTCTATTTATTTCAGAATGGATGAAAAATCTTGAAAGCAAAGCATTGATCCCAACACAGAGCATACTTGAGGAGGAACAGTCCCATAGCATGAAGTTGGAGAGATACATATGGGATGATCCTTGGTTCTCCAGGTTAGAAGTTTTGGGATGTAAAGACCAATTAGAAATGTATCACGTGAACCAGAGTACAGCTATGAGGCAGATGGTCTTCATGCAAAAGCAGATACTATCTCAAAGAGGCTCTGAGTTCTGTGAACTTGGAGCAGGGTGTAGCCAGAGCTTAAAGATTGTTCCATCTCAGAAAGTTTCTCAAGTAGAACATTACTGTAAGCCTGATGTAAATGCTGAAAGTTGGAGATGTAACTCAGCCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGAGCCAGTAATTAAATACAGATTATCAGACTGTAACTCCTGTACCCTTTTAATTGCAGTATTCTGTCTTTCAAGTCTGTCTCTTCTGCCTTCACTCTACAAATTATTCTGCAGTGTTAAAAGAACTTTAGGAGTATACTTAAACTTTGTGATTTTTGCCCTTTCGGCAGATGGTTTTGTGTTACTGAGTGAACTCTGTGGAATAGGAAATAAGGCTTGATGCCTTGTTGGTGATACTTTCACTTAACACCCCTCCTTTTTTTGGTAGGTGTCAAAATAGGAGAGCAATAGGACATTATAACATAGAAATTAATTGACATGCTTTAATAATTTAAATATTAGTTGCTGAGGGGCTGCTTGTTCATATGTCTTTTGCTTAACCAGTTGTTATTTTTTCACCTTAGTAGTATTGAATGTGTCAGGATCCTCCAGACAACACCACCCCCCCTCCACCAAGTTCAGTAATTCTCTGGAAGTACACACTGGACTCAGAAGGCATTAAACTCAGGGTAGTGGATTGTTACAGTGAAATAATACAGAGCAGCACCAGCAGAGGGTAAGGTGTGTGGCGCTAAGTCCAGAGGAAACCAAGTGCAGGTTTTCAGTAGTCACTTATTCTAGTCATCCTTCACGTGGGGAAGTGTTCCTAAATGGGTTTATTCATATCCATTACACGTTTTGTAGTCACTTATTCTGGTCCTCCTTTACATGGGGAAGTGTTCCTCAATGGGTTTATTCATATTCATTACACGTTTTGTAGTCACTTATTCTAGTCCTCCTTTACACGGGGAATGTTCCTCAATGGGTTTATTCATATCCATTACACGTTGTGTAGTCACTTATTCTGGTCCTCCTTTACACGGGGAACGTTCCTCAATGGGTTTATTCATATTCATTACCCATTGTGTAGTCACTTATTCTGGTCCTCCTTTACATGGGGAATGTTCCTAAATGGGTTTATTCATATCCATTACACGTTGTGTAGTCACTTATTCTGGTCCTCCTTTACACGGGGAACGTTCCTCAATGGGTTTATTCATATCCATTACGCGTTTTGTTTTCTACTTAACTACTTACGCTCACTCTTTACTATTTTCCTCTTTCTTGTTGTGATGTTTCTCTGGGTTACCAGTCTGTTTGGAAACAAGTTCACAGTTGCCTTTTCAATAACATGGACAATAAATCTTACCTTGTCCACCCTACTCTTAGAATTTGTTTCTCTATACTCTCATGGACTTTTTCTATTTATTTCAG
Seq C2 exon
AATGGATGAAAAATCTTGAAAGCAAAGCATTGATCCCAACACAGAGCATACTTGAGGAGGAACAGTCCCATAGCATGAAGTTGGAGAGATACATATGGGATGATCCTTGGTTCTCCAGGTTAGAAGTTTTGGGATGTAAAGACCAATTAGAAATGTATCACGTGAACCAGAGTACAGCTATGAGGCAGATGGTCTTCATGCAAAAGCAGATACTATCTCAAAGAGGCTCTGAGTTCTGTGAACTTGGAGCAGGGTGTAGCCAGAGCTTAAACATTGTTCCATCTCAGAAAGTTTCTCAAGTAGAACATTTCTATAAGCCTGATGTAAATGCTGAAAGTTGGAGATGTAACTCAGCCATAATGTATACTGATAAGATTACCTGTGAAAATAATGAGTATGACAAAGCCTTCTACCAGTCCATGCAGCCTGTTCACCCTGCAAGGGTACAAACTGGAGATAATCTTTTAAAATGTACTGATACTGTTAAATCTTTCAATCATATACTGCATTTTGGTGATCATATGGGAATGCATACAGGAGAAAAACTCTATGAATATAAGGAATGCCATCAAATCTTTAACCAGAGCCCATCATTTAATGATCCAGGAATTCATATTGGAGGAAACCAGTATGATTACAAAGAATATGAAAACATCTTTTACTTTTCATCCTTTATGGAACATCAAAAAATTGGTACTGTAGAGAAAGCATATAAATACAACGAATGGGAGAAAGTCTTTGGGTATGACTCCTTCCTTACACAACATACAAGCACTTACGCTACAGAGAAGCCTTATGAATATAATGAATGTGGAACATCTTTCATCTGGAGTTCTTACCTTATCCAACATAAGAAAACTCATACTGGAGATAAACCCTATGAATGTGATAAATGTGGAAAGGTTTTTAGGAATCGTTCAGCCCTTACTAAACATGAACGGACTCACACTGGAATAAAACCTTATGAATGTAATAAATGTGGAAAAGCCTTCAGCTGGAATTCTCATCTTATTGTACATAAGAGAATTCATACAGGAGAGAAACCTTATGTATGTAATGAATGTGGGAAGTCTTTCAACTGGAACTCCCATCTTATTGGGCATCAGAGAACTCATACTGGAGAGAAACCTTTTGAATGTACTGAATGTGGGAAATCTTTCAGCTGGAGCTCCCATCTGATTGCCCATATGAGAATGCATACTGGAGAGAAGCCCTTTAAATGTGATGAATGTGAAAAAGCTTTTAGGGATTACTCAGCCCTTAGTAAACATGAAAGAACTCACTCGGGAGCAAAACCATATAAATGTACTGAATGTGGAAAATCCTTCAGCTGGAGCTCCCACCTTATTGCCCATCAGAGAACTCATACAGGAGAGAAACCCTATAACTGTCAGGAATGTGGCAAAGCATTCAGAGAACGTTCAGCCCTAACTAAACATGAAATAATTCATTCTGGGATTAAGCCCTATGAATGCAATAAATGTGGAAAATCCTGTAGCCAAATGGCTCACCTTGTTAGACATCAAAGAACTCATACTGGAGAAAAGCCCTATGAATGCAATAAATGTGGAAAATCCTTCAGCCAGAGCTGTCACCTTGTTGCTCATCGGAGAATCCACACTGGTGAGAAACCCTACAAATGTAATCAATGTGAAAGATCCTTTAACTGTAGCTCTCATCTTATTGCTCACCGGAGAACTCATACTGGAGAGAAACCATACAGATGTAACGAGTGTGGAAAAGCATTTAATGAGAGTTCTTCCCTTATTGTACATCTGAGAAACCATACTGGAGAAAAACCCTACAAATGTAATCATTGTGAGAAAGCTTTCTGTAAGAATTCTTCTCTTATTATTCATCAGAGAATGCATAGTGGAGAGAAACGCTTTATATGCAACAACTGCGGAAAAGCCTTTACTGGTCACTCAGCCCTCCTCCAACACCAGAGAATTCATAGTGAAGAGAAACTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456:ENSBTAT00000004486:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF079757=C1_4=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development