MmuINT0179543 @ mm9
Intron Retention
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13075298-13081584:+
Coord C1 exon
chr7:13075298-13075393
Coord A exon
chr7:13075394-13077705
Coord C2 exon
chr7:13077706-13081584
Length
2312 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGTCCTCCCTTCTGTTTCAGAGT
3' ss Score
10.8
Exon sequences
Seq C1 exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGGAGAAGAGCCATGGTCAGTGGAGCAAGGATATCCTAAAAGCAGTTGTCCAG
Seq A exon
GTGAGGTGATGCCCCAGGCATAAATGAAGAACTTGACCTCAAAGCTCTCCTTTTTGAGAAATGGGCTAAAGGTGGAGAAGTTATTTTCTGATACATTCAGAATTCCCTCGAGGGTGTTTTCAACTTCATGTTTCCTTTTCATCTACTACTGATTGAGAGCAGAGCCTCTCATAAAACTACATTGTATCCTAAGTCATTCCCCCAACCCCACACCACACACACACACACACACACACACTTTTCTGTCTGCTTTGTGGTTGTTCATATTTCCTGTAACTTCCCTAAGCTAAGGTCTCAGATATTTACCTATGTTAAAATTTATTTTTAAAATTCTAAACTGTAGTCTATGGCTTTAAAGACTTATTTACAAAAAATAGTTTTTGAATATAGACTGTTTTCTCATGGTTTAAAAAAGTCAAAGCGACATAAAATGTGTGTTGAAATCTCACATACACTCACTGCTCTGTACCACATTGCCACTTTCTGGTGCTTCTCGGTGTACCGGTCACCACTTCTCTTTTCCTTGGCAATTGCTTGGTTTGTTACTGCCTTATTGTTGTATTGTTGTCTTATCTCTAAAATCAGATAAGTCAATCCTATTCGCTGGGTAATTTCACTGGGTGTGGTGGTGCATGCCTTTAATTCTGAACACTTGGGAGGCAGAGGCAGGTGAGTTCAAGGCTAACCTGGTCTACATATTGAGTTGTAGGACAGGCAAGGCTACATAGAAACCCTGTCCGCAAAAACAGAAAAAAATATGATTTCTTTAGTAGTGTCATTTGAGTTGTTTTCTAGTGTTTTTCCATGTCAGCCTAAAGGAATTCTTTTAGCATTTTTCTTTTAATTTTTTTTGTATGTTTATGTGTGTGCACGAGCACACAAGCTAGTGCAGGTGCCTAAACTTATAGGTAGTTTTATGCTATCTGACTTAAAAGCTGGAAACTGAACTCAAATCCTCAGTAATATTTTCTTAACTGCTGAGCCATTTCTTCAGCTCCTCTTAGCATTACTTACTTGCTTGCTTAAAAATATTTTAATTTTTTATGGGTATGTGTGTGTGCCTGATGTATATGCATTGCCAGAGGCCACAGAGGTCAGAACAGGGCATTAGATTCTCTGGAACTGTAGTTATAGATAGTTGTTAGCTAGGAATTGAACTGAGGTCTTCTTCTTGTAGTGGTCATAGGAATTGCTTCTTTAGAAGAATCTCTAAACTCTGATGATATTGCCCTCTGTCTTATGTGTTTAAATCTTGACTGGATTCTGGAATGACAAATTTTGTAGTAGAAGTTTATTATAACACCCGGTTTGAAATCTTTCGGCGATACTTTATCATACTCACACACACACACACACACACACACACACACACACACACATACAGAGAGAGAGATTATAATACAGAAGTGAATTATAACTCTATTTAATGACTTAAACATTACTTGCCAAAAGCCTGCATGCTTATTCCTTAAGCCCTTCCTTTCTTCCCTTCCCTCCTCTCCCTTCATCCTATCACCCCTACACTCTCTCCTTTGTTCGTTGTGCATTCCTTCCTTCTTTCCTTTCTTTCTACTAGTATTCACTGTGTCTTTTTGTCAGAGGCATCCTCTGCTACCCTGTTGATAACACTAGGATGACTTATAGGACTTGAAATTCACTACCATCAGGATAATAGTTTATTATACAAAAGAATATAAAGCAATATCCATAGGGTCCAGAAGAAGCCAAACAGAAATTGTGATCATCTGTGAAGTTGCCTACTATGAAACATGGTTGAGCTTAAGTCAGAATCCATTGTGCTTATTGGAGATTGATCATGTAGGCAGTAATACTTATACAGCTGAGAACACACATACTCCAGATCTTTAGAAAGAAAGCACATCTTCACTAGAAATGTCATTAATTACAAGCTCTCTAGAGAAACTGCTATATCTGCTTCAAGGCTGTGAACATGAAAAGCTATTATATTTACAGCATTTCATTTCATAGTCTCGATTCTTAGTGGTTAGGTAAGGATGAGTCATGAAGCAAGCCAGTTTAGTAATGTGCATGGTTTGAGTAGCTCAGTCCTGCATAGCTAACTTTTTCCTGTAAAACCTCCTTTTCATGTGAAAGTGCTCCTCATAAGTTTTATTAGTGTCATGATATACTTTCTTTTATATTCAGCTATTGTTTACTTTTCACTATTTCTCTGGCTTTTATGTCTGGACTTGAAAATGAAATATACTTTAGCCTTTTCCATAGTATGAATAATAAATCTGACCAGTGCATACTGAGGTCTTTTGCACTTACAGTCCTCCCTTCTGTTTCAG
Seq C2 exon
AGTGGATGAGGAATACTGAAAGCAAAGCGCTGATTCCAGCACAGAGTGTTTCTGAGGAAGAACAATCCAGCAATGGAATGATGTTAGAAAGATACATATGGGATAATCCTTGGCTCTCCAGGCTAGGAGTTCTGGGATATGGCGACCAGTTAGAAATGTATCACATGAACCAGAGCACAGGTATGAGGCAAATGGTCTTTATGCAAAAACAAGTACTTTCTCAACGAGGGTCTGAATTCTGTGAACTTGGCACAGAGTACAGCCAAAGCTTAAACTTAATTCCATCTCAGAGAGTTTCACAATTAGAACGTTTCTACAAACCTGATACACATCTTGAAAGTTGGAGCTGTAATTCAGCCATAATGTATGCAGATAAGGTTACCTGTGAAAATAGTGATTATAATAAAGCCTTTTGCCAGTCTGTTCAGCCTGTATACCCTGCAAAAATGCAAACTGGAGATAATCTGTTCAAATGTACTGATGCTGTGAAGTCTTTCAATCATATTATACAATTTGGTGATCATAAAGCAGTACATACAGGAGAAAAACTCTATGGATATAAGGAATACCATCAAATCTTTAACCAGAGCCCATCACTTATTGAATACCCCAAACTTCAAATTGGAGGAAACCAGTATGAGAAATATAAGGAATATGAGAATATCTTTTATTTCTCATCTTTTATGGAACATCAAAAAATTGGCAGTGTAGAAAAAACATATAAATACAATGAATGGGAGAAAGTCTTTGGTTACGACTCATTACTTACTCAACATACAAGCACATACACTGCAGAGAAACCCTATGAATTCAACAAATGTGGAACATCTTTTATCTGGAGCTCTTACCTTATTCAGCATAAGAAAACTCATCCTGGAGAGAAACCCTATGAATGTGATAAATGTGGAAAAGTTTTTAGGAATCGTTCAGCCCTTACTAAGCATGAACGGACACACACTGGAGTAAAACCCTATGAATGTAACAAATGTGGGAAAGCCTTCAGTTGGAATTCTCATCTTATTGTACACACAAGAATCCATACAGGAGAAAAACCTTATGTATGTAATGAATGTGGAAAATCTTTCAACTGGAACTCCCATCTTATTGGACATCAGAGAACTCACACTGGAGAAAAACCTTTTGAGTGCACTGAATGTGGCAAGTCTTTTAGCTGGAGTTCCCATCTCATTGCCCACATGCGGATGCATACTGGAGAGAAACCCTTTAAATGTGATGAATGTGAAAAAGCTTTTAGGGATTATTCAGCCCTTAGTAAACATGAAAGAACTCACTCTGGAGCAAAACCATATAAATGTACTGAGTGTGGAAAGTCCTTCAGCTGGAGCTCCCATCTTATTGCTCACCAGAGAACTCACACGGGAGAGAAACCTTATAACTGTCAAGAATGTGGCAAAGCTTTCAGAGAGCGTTCAGCCCTTACAAAACATGAAATTATCCATTCTGGAATTAAGCCCTATGAATGTAATAAATGTGGAAAATCCTGTAGCCAGATGGCTCATCTTGTTAGGCATCAAAGGACTCATACTGGAGAAAAGCCCTATGAGTGCAATAAATGTGGAAAATCCTTCAGTCAGAGCTGTCACCTTGTTGCTCATCGGAGAATTCACACTGGTGAGAAACCGTATAAATGTAATCAATGTGAACGATCCTTTAATTGTAGCTCTCACCTAATTGCACACCGGAGAACTCATACTGGAGAGAAACCGTACAGGTGTAATGAGTGTGGGAAGGCATTTAATGAGAGTTCTTCCCTTATTGTACACTTGAGAAACCATACCGGAGAGAAACCCTACAAATGTAATCATTGTGAAAAAGCTTTCTGTAAGAATTCTTCCCTGATTATTCATCAGAGAATGCATAGTGGCGAGAAACGCTTTATATGCAATCAGTGTGGAAGAGCCTTTAGTGGTCATTCGGCCTTACTTCAACATCAGAAAAACCATAGTGAAGAAAAACTGTAACTGAATTGGCAAAGACTTTGGGGGCAGAAAACCCTATAAGTATAACCAAGAGGAAAGTTTTTCACTAAGAATTTAGTTAAATTGTCTTTACTATACAGCAAGAAATCTCTTTAGAAGAAACTTTATGAGTTTATAAATGAGAAAACCTTTCAGCAGTTATGTAGCCTGTATTCAATGGTAGGAAATTACAGGAAAAAAAGTTCTAAGCTTCTTATGTGGTCCACAAGGAATCCATATTTGAGAAACATGATTAGGTGAATAAAGTATTCTAGCAAAAGCTCTAATCTGTAGATCAAAATGTAGAAGTTTGTGCATTATTAAGAGGAAAGTCTTGTGCCAAGAATAGTTTAACTGGAAAGATACTACCTGGAATATTAGATGGAAAGCTTCACATTAGCATTTTGTGCATAATGATAGAAACAGATTCTGATAATACAAGGGGAGGGTCTAGGTACTCTTTAAGTGATAGAATATGGAATACTAAGTCTGAATTAATGAAAAAAAAAACTAGTGTAGTACTGAGTGGGGCATTCACTGTTGATCAAGGTTAACCTCTTTAGAAAAGATTAGTAAAGGAGATCCCGAATGATAGAAGATAGAAAGACTATTGCCTAGAAATATGAGACTGAGTTTTGAAACAGAAACCAGTACTCAATAATGTAGTGTCAGTGTCCGTTTGGTACGTATCAGTGAATTATTGGACAGTTAGCTTATAACTTATAGGCAGTCACTATAAATTATAATTGTGGGCACTAGCAATATACATAACAGAAGAAACAACAATAAGGATACAATTGTATATAAACACCTACTATAACATCCATGTGTGTTTGGATAAAGACCTCTTAGAACCATGGAGAAATTAACTCAGTTAATTTAAGACTTTGTTTGGTTTTTTTTTTTTAAGTTTAGTTTTATTTTTTGTTTTACAAATATATAAGCACCATGTGCTAGGCCTCCTCTTAAATGTTTTTTAAAAAATATTAACTTGTTCAATTCCCTTAACTCTATGAAATAGGCATTATTACTACCCCCAGGTTTTCAAATGAATTAACAGAAGCAGAGGTGTTGAGTAAATGTATCCAAGAGACACATCTAGTAGGGAGTTCAGTTTTAAGATAGTTTGGCTCCAGAGTTGGTGTTTTTAACCACTGTGTTTTCTCACTTTTGTTCAGTGTTTTTATAATATTTGATAATAAAATTCAAGAAAATCCTAACTAATGGAAACCTGGTTACCTAATTCCTGTATCCTGAAGGATTTCTACTATGTAAACCACAATCTCTTTGGAATATGAACAGCTCTGAGAAGGACATGGAAACCACTGTGTTTTATGGGTCCTGGGTTTAAGGGTTACAGACACCCGGGCAGTGCGAACTTGAGCAAGTGTAAGGACTTTTCCCACGGGGGTTCAGACGTGCCCCTGACAAAGCAGAGGCAAGAGTGTTTGTTCTTTGACTGTTGGAAACTAGTATCCATTGGCACACCAGTCTTCAAGGTACCCTCTGAGTTCATTATTAGCCTCTTCTCTGCATGAAGTGATTGCTTGATGGGAGGAAAGACTCAGGACGAGAGTCCTGCTGAGTTCATCACCAACAGTAAGGACGTTTCTTTTCAGGAGAAAAGGAGCAAAAGGGAATCATGGACTCAGGCAAGGGTTGTTTCTAGATATGCGGGTATTAAGAAGAAATTGGGCACATAAGATTCATCTAACCTTTTACAGTCCTGGACCTCACACACACACACACACACACACTGTGGTAAAAATTGGTAGCATACTAGTGTTAAGACACTATGTTCACTGCTGACTCTTAGAGCTTCAGGTAACTTAGGATGTAACATTTAGTGCCCGCCTTTGCAGGGTCTAATAGTCACTTAATAAATGTTATGGCAAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-Zfp606:NM_026112:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF139121=zf-C2H2_6=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: