BtaEX0041485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002956 | ZNF674
Description
Bos taurus zinc finger family member 674 (ZNF674), mRNA. [Source:RefSeq mRNA;Acc:NM_001102010]
Coordinates
chrX:102874011-102880558:-
Coord C1 exon
chrX:102880460-102880558
Coord A exon
chrX:102874719-102874793
Coord C2 exon
chrX:102874011-102874111
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCCCCATCCCATCCCTCAGGAT
3' ss Score
8.62
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GATACCTTGTGGCCCAGCCACATGGGATCTTCAGGTTGGGACAAGGAGAAGAGGAAGCCAGGATAGCAGCTGGAGAAAGCGTGATATGGAGCTGTCCAG
Seq A exon
GATCGTCCCAGTGGACCGGCCCTGAGTGCCCTGTCTCATGCATTGAACCTGGACTGGCGATCTATTTCACATATG
Seq C2 exon
AGTACATCATGAGAAATGCTGGGCTGGAAGAAGCACAAGCTGGAATCAAGATTTCCGGGAAAAATATCAATAACCTCAGATATGCAGATGACACCACCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002956-'13-8,'13-7,14-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000003850fB8048
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCTTCAGGTTGGGACA
R:
AAGGGTGGTGTCATCTGCATA
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development