BtaEX0041487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002956 | ZNF674
Description
Bos taurus zinc finger family member 674 (ZNF674), mRNA. [Source:RefSeq mRNA;Acc:NM_001102010]
Coordinates
chrX:102880845-102882836:-
Coord C1 exon
chrX:102882794-102882836
Coord A exon
chrX:102881706-102881752
Coord C2 exon
chrX:102880845-102880971
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGTATCTGTTGGCCCAATAGTAC
3' ss Score
5
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATCTCCATCCTTGGTCTGAGCAGGACTGATGGTCATGTCCCAG
Seq A exon
TACAGGTATTTATGGAGAGTACACCTGGAAGAATTTTTGAACCAAAG
Seq C2 exon
GAAACATTGACCTTCAGGGACGTGTTTGTGGACTTCACCCAGGAGGAGTGGCAGCAGCTGGATGCTGCTCAGAAGAACCTCCACAGGGATGTCATGCTGGAGAACTACAGCCACCTGGTCTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002956_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000003850fB8049
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGTCTGAGCAGGACTGA
R:
TCTCCAGCATGACATCCCTGT
Band lengths:
138-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development