HsaEX0074161 @ hg38
Exon Skipping
Gene
ENSG00000147121 | KRBOX4
Description
KRAB box domain containing 4 [Source:HGNC Symbol;Acc:HGNC:26007]
Coordinates
chrX:46450431-46462874:+
Coord C1 exon
chrX:46450431-46450475
Coord A exon
chrX:46451566-46451614
Coord C2 exon
chrX:46462748-46462874
Length
49 bp
Sequences
Splice sites
3' ss Seq
TGTATCTACTTGCTCTGTAGTAC
3' ss Score
5.23
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCTCCATCCTTTGTCCAGAGCAGAACAGGATGGCCATGTCCCAG
Seq A exon
TACCAGTGTTTATGGAGGTTATACCTGGAAGTCGGGTTTTGACTAAAAG
Seq C2 exon
GAATCATTGACCTTCAAGGACGTGTTTGTGGACTTCACCCTGGAGGAGTGGCAGCAACTGGACTCTGCCCAGAAGAACCTCTACAGGGATGTCATGCTTGAGAACTACAGCCACCTGGTGTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147121_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000298190fB8208
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAGGATGGCCATGTCC
R:
ACACCAGGTGGCTGTAGTTCT
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development