BtaEX0041488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002956 | ZNF674
Description
Bos taurus zinc finger family member 674 (ZNF674), mRNA. [Source:RefSeq mRNA;Acc:NM_001102010]
Coordinates
chrX:102882794-102884878:-
Coord C1 exon
chrX:102884770-102884878
Coord A exon
chrX:102883398-102883466
Coord C2 exon
chrX:102882794-102882836
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTTATTTTACTAGTAA
3' ss Score
6.93
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTCAGGGTTCATAACAGCCAACAGCTCACCAGCTTCAGATGCCAGCTGATCTACCATGGGCTTCCTTAGTTAGTCTACAGAAGACCCAGTCTGAGACCTCAAGAGGAG
Seq A exon
TAATTAATATTGTCAAAAATGATAAAATGCAAGTAAGCAAAAAAGGAAAGGTGAAATCAACCCTCAAAG
Seq C2 exon
ATCTCCATCCTTGGTCTGAGCAGGACTGATGGTCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002956_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGGGTTCATAACAGCCA
R:
TGGGACATGACCATCAGTCCT
Band lengths:
151-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development