BtaINT0165945 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002956 | ZNF674
Description
Bos taurus zinc finger family member 674 (ZNF674), mRNA. [Source:RefSeq mRNA;Acc:NM_001102010]
Coordinates
chrX:102882794-102884878:-
Coord C1 exon
chrX:102884770-102884878
Coord A exon
chrX:102882837-102884769
Coord C2 exon
chrX:102882794-102882836
Length
1933 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCCTGATTCTGCCTTCCTAGATC
3' ss Score
7.61
Exon sequences
Seq C1 exon
GGTCAGGGTTCATAACAGCCAACAGCTCACCAGCTTCAGATGCCAGCTGATCTACCATGGGCTTCCTTAGTTAGTCTACAGAAGACCCAGTCTGAGACCTCAAGAGGAG
Seq A exon
GTGAGTTTGCCTGGTTGAAGGTAGAGACATGGTCCTGAAGGGAAGGTCCTAGCAAAGGTATCTTTGTCTTTGAATCCTTGGGTCCTGCCTCCTTAGTAATAAGACAGCTCATTTGGGAATTCCCTGGTGGTCCAGTGGTTAGGACTCTATGCTTTCACTGCTGAGGGTCCAGGGTTCGATCCTTGGTAAGGGAACTAAGATCCCACAAGCCGAGCAGCCAGACCGAAAAAACAAAAAACCCTAAACCCCAAAAAGACAGCTTCTCTGAGGGGAGTTGGAAGAGAAGCACCAGACCAGACCTCAGGGCAGAGTGGGGAGATCCACAGGACAGACTCAAATGCTCTAGTTAGAGGAAAGTGGCTCACAGTATAGCAGGTTCTAGAAGAACTGAACCTGCAGTGCCCTCTGTCCCTTCCTTCAGCTGAAAGAGAGCAAGACTTCTAGCCACCATCAAGAGCTATGTCATGGTGGTCAGTTGAACCTCTATTGCAGGAGAGAGATGAAAGTTATGGATGGATGGAGGGATGCTGCCCTGTGGTAGTGCTAGCAAGGACATGATCAGGCTGGAAAGATTGACTCCCTACCTCCCAGGACTTTCTCCACTCTAAACACATTTGTGCACACAACATTTGTGCTCCCCTCTTGTGCTGTGGGCTATTTCAGTCAGTCCCATAGTAGGAACAATCCACTTGTCTATAGCAGAAATGTTGAATCTCCTCTGCCCTGACTAAATGACTAAATGTTTTTGGTTTCTGCATGTCTGTGAAATCTCAGAGTAGTCTCTAGGTAGCCATCACCTAACTATGCTACCCCATTTTCATGCTAGTAACTGGGTCTGGAAGCATGACTCATTAAGCTCCATCTTGCTGAACCCTGTGGTTCTGATACTAAGGCAGGGATTGCTAGAGTGGCAGTGGTTGACAAAAGCTCCTTGCTGAAAATTTGTTTTGAAAACTGCCAAATAAGGAAGAGCTTGGCAATCAAATGGCCATGATGGGAAATAAGGAAGTATTAGGGAGGGAACAGGGAGCTGGTGGGCTGGAAGGACCGGGGTGGGAGGGAGCAAGGTCAGTGGTTTCCAGTTCCGTGTGGACGTGACCAATGCCAGGCCCTTAACCTCCCTCCATCCCCCTACCTTTCACCCTCCACCCCTTTCCCTTCCGCCCTGCACTCAGCCCTGGTTAGTCTCCTTCCTCCAAACCGCAAGTTGTCCCTGTCTCCAGACTGCTCAGGGTGTGTCACTTCAAGGGCTCAGTGTGATAATTAGGTGATTTGTAATGATTTCTCCTTTTTATTTTACTAGTAATTAATATTGTCAAAAATGATAAAATGCAAGTAAGCAAAAAAGGAAAGGTGAAATCAACCCTCAAAGGTAAGCAGGGTCAACATTTTAATAGATGTTCTTCAGTACATGCATATAGCTTAACAAAGGAGATCCCACCCACCTGCTTTCTGGTAACCTACTTTTAAATATGTTAAGACATGAGAACAGGATTCCGTTGCATTTTTAAAGCCCATGTGGTATTTCCCATTTTGTGTGTCTTATTTTTTTTAAACTTGAGTCCCCTTTACTGGAGGTTTAGTTGCTTCCAGATTGTTGAATGGTGGAAACACCTAAAGTTAACATCTTTGCAAATAAATTATGATAAATTCCCAGGCATAGAATTCTTGAGAGAAAGGAAATATCAGGTTGTTAATGGCTTCTGAGTAGAAGTCTTTAAACACAAGTCATATATCTGTCTAGGGAGAGAAAATCAATTCCCATGAGACTGTGCAAAATCATGGGATCTTAGCCAAGGGAACAGCCTGGAGCTACCAAGCCTTCTGTTCTGATCATCCTCACTGTGGGGCAGGGGTGATTGTTATTAGGTTGGTGATGGTGGTCTCAGGGCTGTGTGCAATGACCTCAACCCTCCTGATTCTGCCTTCCTAG
Seq C2 exon
ATCTCCATCCTTGGTCTGAGCAGGACTGATGGTCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002956:ENSBTAT00000003850:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]