BtaEX0041544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014768 | ZNF786
Description
zinc finger protein 786 [Source:HGNC Symbol;Acc:HGNC:21806]
Coordinates
chr4:113025928-113029791:-
Coord C1 exon
chr4:113029665-113029791
Coord A exon
chr4:113026937-113026995
Coord C2 exon
chr4:113025928-113026080
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTATTTTTTTTTAGGAA
3' ss Score
11.98
5' ss Seq
TAGGTATTT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TTACCTCTGACTTTTGAGGATGTGGCCATTTATTTCTCAGAGCAAGAATGGCAGAATCTAGAGGCATGGCAGAAGGAGCTTTACAAGCAAGTAATGAGAGCCAATTATGAGATTCTCCTTTCTCTAG
Seq A exon
GAAGATGGTTTTATTTTAAAAGATGCAGAGAGTTCAACCCAGATGAAGATTGAGAATAG
Seq C2 exon
ATAATGGACTTCCCAAACCAGAACTAATATCCTGGATTGAGCAGGGGAGAGAACTCTTTAAGAAATGGGGAGAATCACAGGAATCAAGAAACATAATTTGCTCTGCTGCTGATTTGCATTTTGATCCACTTATTGAGGGACAGCCATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014768_MULTIEX1-3/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000019646fB8068
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAATCTAGAGGCATGGC
R:
AGAGTTCTCTCCCCTGCTCAA
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development