BtaEX0041542 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014768 | ZNF786
Description
zinc finger protein 786 [Source:HGNC Symbol;Acc:HGNC:21806]
Coordinates
chr4:113025928-113034477:-
Coord C1 exon
chr4:113034126-113034477
Coord A exon
chr4:113029665-113029791
Coord C2 exon
chr4:113025928-113026080
Length
127 bp
Sequences
Splice sites
3' ss Seq
TATCATGTCTATAATTTCAGTTA
3' ss Score
6.22
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TTCCATTTGCAGTTGACGTTGCATTTCCCCCACCGCACACCCTTTTCGTCTCGGTGTCCCTCCCCTGACTCTCCCAACACACTGCCAGGACTGGTCATCCAGCTTGCACCAGATGCCAGGTCCGCACAGAATGGGCGGCGCCCGTTCCTCCCGGCCGCAGGGGGCGCTGTGGGGCGGAGGTGCCCGCGAGTTCCAGCGTGCACCGCGCCCGGGCCGGGCCTGCGGGTCGGAGCGGGGCGCGAGGCCGCCGCGGGGGAGGTGCCGCGGGGCCGCCTGGAGCTTGGCTTGGCGGTAGCCCGGTGCCACCGGGCACCTGGTGGGACCGCCAGAGCCCATGGCCGAGCCGGCTCCG
Seq A exon
TTACCTCTGACTTTTGAGGATGTGGCCATTTATTTCTCAGAGCAAGAATGGCAGAATCTAGAGGCATGGCAGAAGGAGCTTTACAAGCAAGTAATGAGAGCCAATTATGAGATTCTCCTTTCTCTAG
Seq C2 exon
ATAATGGACTTCCCAAACCAGAACTAATATCCTGGATTGAGCAGGGGAGAGAACTCTTTAAGAAATGGGGAGAATCACAGGAATCAAGAAACATAATTTGCTCTGCTGCTGATTTGCATTTTGATCCACTTATTGAGGGACAGCCATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014768_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCAGCGTGCACCG
R:
TGATTCCTGTGATTCTCCCCA
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development