RnoEX0101699 @ rn6
Exon Skipping
Gene
ENSRNOG00000006925 | Zfp786
Description
zinc finger protein 786 [Source:RGD Symbol;Acc:2293500]
Coordinates
chr4:77502738-77510202:-
Coord C1 exon
chr4:77510153-77510202
Coord A exon
chr4:77506906-77507032
Coord C2 exon
chr4:77502738-77502893
Length
127 bp
Sequences
Splice sites
3' ss Seq
TATGATGTCTTTCACTTCAGTTA
3' ss Score
7.85
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CAAAGCTCAGGCTAGGCGCGTCCGCGCTGGCCATGGCCGGACCCGCTCCG
Seq A exon
TTACCGCTGACTTTTGAAGATGTAGCCATTTATTTCTCTGAGCAAGAGTGGCAGCACCTAGAGACATGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTATGAGACTCTCATCTCTCTAG
Seq C2 exon
ATAATGGACTGCCCAAACCAGAACTAATATCCTGGATGGAACTTGGGAGAGAGAACTTCGGCAGCTGGGGAGAAGGACAGAAAGTAGACAGAGGAATTCGCTGTTCTGTAGATGATGTGTGTGTTCATCGAGTCACTGAGGAACAGTTACCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006925-'1-3,'1-2,6-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCTAGGCGCGTCC
R:
TCTCGGGTAACTGTTCCTCA
Band lengths:
201-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]