GgaEX1003936 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:496039-498552:-
Coord C1 exon
chr2:498271-498552
Coord A exon
chr2:496699-496825
Coord C2 exon
chr2:496039-496158
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGTGCCTCCTGCCATTCCAGGTC
3' ss Score
8.15
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGGACGGTGGTGGCGGCGGTGCAGGCGGTGGAGCGGAAGGTGGAGGCGCAGGCCCTGCGGCTGCTGAGCCTGGAGGGCCGCGCCGAGACGGCCGAGAAGAAAATGTCGGAGCTGGAGAAGGCCGTGCTGGAGGTCGGAGGGCAGCTGGAGCGCCGCTGGGCCGCCCTGACCGCGCTGCTGCAGGAGAGCGCGAGGCGCCTCGAGCACGTCGAGAGGCAGCTGCGGCACCGGGCCTGCTGGGCACCGCGGCACGGGCTGGGCGGCGGCGGGGATGAGCCTCAG
Seq A exon
GTCCCTGCGTCAGGTGAGGACGATGCTGCCTGTTTGCCAGAGCAGGAGTGGGGCGGTGTGGACAGCCGGCAGCAGGAGCTGTACAGGATGGCGGTGAAGGGGAGCTACGAGGCTGTGGTCTCTCTCG
Seq C2 exon
GACCTGGGGACACCAATTCAAAACCCGCTCTGCTGTTGTCAACTGAGGATGGGGAGGATTCAGCTTCCAGGACCCACGGGCTGCTGGAGGAGGGAGCAGTGCTGGGGCACAGTGGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019711_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.409 C2=0.953
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=75.5)
A:
PF0135222=KRAB=WD(100=86.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACGGCCGAGAAGAAAAT
R:
TCCTCCCCATCCTCAGTTGAC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]