MmuEX0053614 @ mm10
Exon Skipping
Gene
ENSMUSG00000051499 | Zfp786
Description
zinc finger protein 786 [Source:MGI Symbol;Acc:MGI:3026883]
Coordinates
chr6:47825041-47830867:-
Coord C1 exon
chr6:47830396-47830867
Coord A exon
chr6:47826962-47827088
Coord C2 exon
chr6:47825041-47825196
Length
127 bp
Sequences
Splice sites
3' ss Seq
TATGATGTCTTTCACTTCAGTTC
3' ss Score
8.29
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GGATTTGTGGGAAAATATACACCTCTGGCCCTGGCCAGGTGTATCCCTTAGTGGCAACCTGTTCCGAGGGGAGGCTCTTTTTCTGACCCTTTTCTTGCCAGTCTTAGTCCCCATCTTGACTCCAGAGCTCACTGCAAAGATGGACCCTGTGCACCCAGTGCTTGTCTGGAGGTCTGGGCCTTCTCTCCACTCTCGTGTGTTCTTTGTCACTGTAGGGAAGAGTGGGCTGTGGCCACGCGAGGTTCTGATGTTGAGCCGTGCTGCTCCTCCTGCCCGCAGGGGGCGCTGTGAGACAGGATGACGGCTGCGCTCCCCGGCGACCGGGCCGGGCGGTGGAGTTGGGGCGAGTGGGAGCGGCGACCTGGGGTCGGTGCGGAGTGAGTGCACGCTTTATCGCCCGGGAACGTGGGCGTCGCCGGGGCCAAGGCTCAGGCTAGGAGCGTCCGCGCTGGCCATGGCCGGACCCGCTCGG
Seq A exon
TTCCCACTGACTTTTGAAGATGTAGCCATTTACTTCTCTGAGCAAGAGTGGCAACACTTAGAGGCCTGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTACGAGACTCTCATCTCTCTAG
Seq C2 exon
ATAATGGACTGCCCAAACCAGAACTAATATCCTGGATTGAACTTGGGAGAGAGCTCTTCGGCAGCTGGGGAGAAAAAAAGAAACCAGACAAAGAAACTCACTGCTCTATAGATGATGTGCATGTTCATCTAGCCATTGAGGAACAGTTACTTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051499-'1-1,'1-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGATGTTGAGCCGTGCTG
R:
GTTCTGGTTTGGGCAGTCCAT
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types