BtaEX0001281 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MUV6]
Coordinates
chr18:65898624-65900953:+
Coord C1 exon
chr18:65898624-65898922
Coord A exon
chr18:65900426-65900552
Coord C2 exon
chr18:65900837-65900953
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCACCTTCCGACTCTGGCAGGGC
3' ss Score
7.21
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGAGAGGGCAGGGTCGCGGCCGGCTTGGCTGGAGGGTCTTGTGACCCGAGGCGCGGGCAGCGAGGACGCGCGGGAGGAGATTCGAGGCGCGGGCGGCGGAGCCAGGAGGCCCACGACTCATAGCCGGTCTCAGTTTCCCCGGGTGCCGCTTGGGCTGCCGCCGAGCCGCGCGCTCTCTGGTTTCCACGCAGCCCCGACGCGGCGCCCTTGACGGACGGGGAGTGAGGCCCGCGTCTGGGCGCCCGCCCTTTCTGCAGGTTCCAATGGCGGCGGCGGCGGCGCAGCCCGACCAGGAACAG
Seq A exon
GGCCTAATGGCCTTTGAGGATGTGGCCGTGCACTTCTCCCAGGAGGAGTGGGGGCTCCTGGATACAGCGCAGAGGGCTCTGTACCGCCGGGTGATGCTGGAGAACTTTGCCCTCCTGGCCTCGCTGG
Seq C2 exon
GCCTGTCTGTGTCCCGGCCCCGTGTGGTCACGCAGCTGGAGTGCGGCAACGAGCCCTGGGTTCTCAGTGGGGCGGACGTGACCTTGGCCTGGGATGCCCAGAGGAGGCCCCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039453-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.225
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTCATAGCCGGTCTCAGT
R:
CTGAGAACCCAGGGCTCGTT
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development