HsaEX0073418 @ hg19
Exon Skipping
Gene
ENSG00000083812 | ZNF324
Description
zinc finger protein 324 [Source:HGNC Symbol;Acc:14096]
Coordinates
chr19:58978463-58981211:+
Coord C1 exon
chr19:58978463-58978550
Coord A exon
chr19:58980547-58980673
Coord C2 exon
chr19:58981095-58981211
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCCCTGCTCTTTTAGGAC
3' ss Score
13.31
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CAGGCCACACCGGTGGTCTGGGCTGGGGACCGCGGGTCGGGTCCGGTTTCCAGGGGGTTCCTGGTGCTCGAGGCTGGCGGCGAGGAAG
Seq A exon
GACCAGATGGCCTTTGAGGATGTGGCTGTGTACTTCTCCCAGGAGGAGTGGGGGCTCCTGGACACAGCCCAGAGGGCCCTGTACCGCCGCGTGATGCTAGACAACTTCGCACTTGTGGCCTCGCTGG
Seq C2 exon
GACTCTCCACCTCTCGACCTCGTGTGGTCATCCAACTGGAGCGTGGCGAGGAGCCCTGGGTTCCCAGTGGAACGGACACAACCCTGTCCAGGACCACCTACAGGAGGCGCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083812-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.550
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGTGGTCTGGGCTG
R:
AGGGTTGCGCCTCCTGTAG
Band lengths:
197-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)