BtaEX0041636 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008943 | ZSCAN12
Description
Bos taurus zinc finger and SCAN domain containing 12 (ZSCAN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001077138]
Coordinates
chr23:30079857-30087119:+
Coord C1 exon
chr23:30079857-30079976
Coord A exon
chr23:30080717-30081203
Coord C2 exon
chr23:30086981-30087119
Length
487 bp
Sequences
Splice sites
3' ss Seq
GATGATAGCTTCTCCCTCAGTTC
3' ss Score
2.8
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTCTGCTGGCCTCCTGGGGCTGCGGTTGAGCGAGCTTTTGCTGCGAACGCGGCGGGTGGGCTGCTGGCCGTCTTCCGGCCAGGCTGGAGCGGGGCATCCTCTGGTGCTCACTTGCCCAG
Seq A exon
TTCCAGCCAGAAAAAAACGACACAGGAGATCTTGCTTGAAGCATTGATAAGCTTTTGTATAGCAATGATGGCATATACTTGGTCTATCCAGGCCATGAAGGACCGGGAAGAACTTTTGGAAGTAAAGATAGAGGAAGAGGAGCTGGAGGAGGAGCATAAATATGCCACTACACAGGATCAGAACCTTCAAAAGAACACCACCCACAGTAGGGAGGTCTTCCGACGGTACTTCAGGCAGTTCTGCTACCAGGAAACATCTGGGCCCCGTGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGCTGAAGCCAGAGACCCACACCAAAGAGCAGATTCTGGAACTACTGGTGCTGGAGCAGTTCCTGACCATCTTGCCTGAGGAGCTCCAAGCCTGGGTCCAGGAACAGCATCCAGAGAGTGGGGAAGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGTTGGATGAGCCAGGATATCAG
Seq C2 exon
GTCTCAGTCCGCAGTGAGGAACAAGAATTACAGGAGATCGTACCTCTAAGAACAGAACAAGAACCCAGAATATGCCTTCAGTCTGTGCAAGCCCAGCCAAAGTGTGAATCTGCAGAACTTGAAGCCCAACAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008943-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.264 C2=0.532
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=67.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTGGCCTCCTGGG
R:
TGCTTCTGTTGGGCTTCAAGT
Band lengths:
256-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development