HsaEX0074550 @ hg38
Exon Skipping
Gene
ENSG00000158691 | ZSCAN12
Description
zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:HGNC:13172]
Coordinates
chr6:28378955-28399734:-
Coord C1 exon
chr6:28399657-28399734
Coord A exon
chr6:28398004-28398473
Coord C2 exon
chr6:28378955-28382609
Length
470 bp
Sequences
Splice sites
3' ss Seq
AATGATGGCTTATTCTTCAGGAC
3' ss Score
7.18
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCTGGCCCTGGGGGCCGCAG
Seq A exon
GACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTAGCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATAGAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCGTCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTTGCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAG
Seq C2 exon
GAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGGTAAGATAATATCATCCAGAATGTGGAGACGAGGCAATCGATGATGCTGGAAAAGTTGAAGAGAGAGTTTGAATGAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158691_MULTIEX1-1/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.231 C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=70.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGGTTCGAGGCCTCTTG
R:
AATGCTGGCAAACCTTCCCAA
Band lengths:
349-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development