HsaALTD1029577-1/2 @ hg38

Alternative 5'ss

Gene

ENSG00000158691 | ZSCAN12

Description

zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:HGNC:13172]

Coordinates

chr6:28378955-28391742:-

Coord C1 exon

chr6:28390596-28391742

Coord A exon

NA

Coord C2 exon

chr6:28378955-28382609

Length

0 bp

Sequences

Splice sites

5' ss Seq

GAGGTCAGA

5' ss Score

5.24

3' ss Seq

ATTGTTATTTTATGCCTCAGGAA

3' ss Score

7.36

Exon sequences

Seq C1 exon

TCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGAGTGCAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCCACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAGAGAATTCACACTGGGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTACAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCAAAGATCAGTCCTCACGGAACATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGCCTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGTGTGGAAAAGCCTTCAGACAGAG

Seq A exon

NA

Seq C2 exon

GAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGGTAAGATAATATCATCCAGAATGTGGAGACGAGGCAATCGATGATGCTGGAAAAGTTGAAGAGAGAGTTTGAATGAAGGAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000158691-6-8,7-8-1/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.242 A=NA C2=0.050

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.1),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8)

A:

NA

C2:

NO

Main Inclusion Isoform:

ENSP00000354305

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSP00000380039

Other Skipping Isoforms:

NA

Associated events

Conservation

Mouse

(mm10)

chr13:21369574-21369575

Mouse

(mm9)

No conservation detected

Rat

(rn6)

chr17:45279405-45279406

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

chr18:32791-32792

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr15:951866-951867

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GTGTGGGAAGGCGTTTACTCA

R:

CTCCAGCTTGGGGTTCAGAGT

Band lengths:

251-429

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

Autistic and control brains

Special

HsaALTD1029577-1/2 @ hg38

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS