BtaEX0041642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039512 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr25:37349164-37351884:-
Coord C1 exon
chr25:37351522-37351884
Coord A exon
chr25:37350481-37350602
Coord C2 exon
chr25:37349164-37349584
Length
122 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTTGTTTTCTTTAGGCT
3' ss Score
10.9
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CGCGCTCTCTCGAACGGTCCCCAGGGAAGGGGGATCAACGAGACGCACCGGCCTCCGAGAGTCCTAGAGAGGAAACGGAAGGGGCCCCTCCTTAACGCACCTGTCTGACCGCGTCCGTCGCCCACTTCCGGCTCGCCGCTGGCTGGGGCGAGCCTTCCTCAGGTGTGGGGCTGTGAAGGGAGGCGAGTTTGAGTAGCGGGGCCGAGGTGGCTGGGGCCCGGGTTCCGTGCTGTGGGGCTGCTGCGGGTGTCGGCGGTGGCGGCGAGGCTGACGCTGAGGCGCGCGTCTCCCCGGAGCTGCCTTTCGCAGCACCGAGGCCTTGCGGGTCGGGATCCCGGGGGCGCCGCACGGCGCTCGGCTCAG
Seq A exon
GCTGAGCACACTGTCACATTCTAGCCACCAACAAGGCTATTGGTTTTGCCTGCAAAATGCCTTAACTGTCTGCTTCTTTGCCACCTCCCTGATCTAAGTCTCTATCTCCTGCTTGGACTACG
Seq C2 exon
ACCTTCAGTCTTTTGGGAGGTGGTGTGAAGATGCTTGTAGAGCGTCCAGGGATGGCAGAAGAGCCTCAGCAGCAAATGGGTGGCCATGTGGTAAAACTAGAGAAAGAGCTGCCGTGGGGCAGGACGAGGGAGGACCCCAGCCCGGAGACTTTTCGCCTGCGGTTTCGGCAGTTCCGCTACCAGGAGGCGGCCGGGCCTCAGGAAGCCCTCAGGGAGCTCCAGGAGCTCTGTCGCCAGTGGCTGCGGCCCGAGCTGCATACCAAGGAGCAGATCCTGGAGCTGCTAGTGCTGGAGCAGTTCCTGACCATCCTGCCACGGGAGTTCTACGCCTGGATTTGGGAGCACGGCCCCGAGAGCGGCAAGGCCCTAGTGGCCATGGTGGAGGACTTCACGCAGAGAGCCCTGGAAGCCAAGGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039512_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGGAGGCGAGTTTGAG
R:
CCATCCCTGGACGCTCTACAA
Band lengths:
246-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development