HsaEX0073796 @ hg19
Exon Skipping
Gene
ENSG00000197037 | ZNF498
Description
zinc finger protein 498 [Source:HGNC Symbol;Acc:21961]
Coordinates
chr7:99214571-99217616:+
Coord C1 exon
chr7:99214571-99214639
Coord A exon
chr7:99216148-99216274
Coord C2 exon
chr7:99217184-99217616
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTCCATTGTCTTTTTCAGGTT
3' ss Score
11.94
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGCTCACTTCCGGACCGCGGATAGCACTGGCGACCCTAGCGGGTGAGAGGCCCTTCAGGGCCGCGGCGG
Seq A exon
GTTGAGCGCACCATCACATCTAAGCCATCAGCAAGTTTGTTGGTTTTAATCTCCAAAATACGTCTTGATTTTGTCTGACTCTTTGCCACCACCCTGATCTAAGCCCTTATCATCTGCTTGAATCACT
Seq C2 exon
GGTCATTGATGCAGTCATTCTCAGTCTCCTCGGAGGGAGTCTGAAGATGCTTAAAGAGCATCCAGAGATGGCGGAAGCTCCTCAGCAGCAGTTGGGTATTCCTGTGGTGAAACTGGAGAAAGAGTTGCCATGGGGCAGAGGAAGGGAGGACCCTAGTCCAGAGACTTTTCGGCTGAGGTTTCGGCAGTTCCGCTACCAGGAGGCAGCTGGACCCCAGGAAGCTCTTAGGGAGCTCCAGGAGCTCTGTCGTCGGTGGCTGAGGCCCGAGTTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACTATCCTGCCCCGCGAGTTCTACGCCTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGTGGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037_MULTIEX1-2/7=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.184
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCGGACCGCGGATAG
R:
CCGAAACCTCAGCCGAAAAGT
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)