BtaEX6000621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004538 | PRDM9
Description
Bos taurus zinc finger protein 596 (ZNF596), mRNA. [Source:RefSeq mRNA;Acc:NM_001101948]
Coordinates
chr1:45026490-45029426:+
Coord C1 exon
chr1:45026490-45026539
Coord A exon
chr1:45028323-45028482
Coord C2 exon
chr1:45029325-45029426
Length
160 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTTTTATTCATGTGGAAG
3' ss Score
-2.19
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GTAAACTTTCTTCGATGGCCTTCAGAGTGGAGCACAATAAACACCAGAAT
Seq A exon
AAGACAATGTCCAGAGCACCATTAAGTAAGGAATTTAGTTTGAAGGAATTGCCGGGAGCAGCCAAATTGCTGAAGACAAGTGGCTCCAAGCAGGCTCAGAAACTGGTGCCCCCTCCCGGAAAAGCAAGGACTCCTGGACAGCACCCCAGACAAAAAGTCG
Seq C2 exon
AACTCAGAAGAAAGGAGACTGAAGTGAAGAGGTACAGTCTACGAGAAAGAAAGGGGCATGTGTACCAAGAGGTCAGCGAGCCCCAGGATGATGACTACCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004538-'4-5,'4-3,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.759 C2=0.543
Domain overlap (PFAM):
C1:
PF0230512=Phage_F=FE(17.0=100)
A:
PF0230512=Phage_F=PD(3.2=5.6),PF095145=SSXRD=PU(0.1=0.0)
C2:
PF095145=SSXRD=WD(100=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCTTCGATGGCCTTCAGA
R:
AGGTAGTCATCATCCTGGGGC
Band lengths:
146-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]