BtaEX6007299 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101285752-101446338:+
Coord C1 exon
chrX:101285752-101285952
Coord A exon
chrX:101288529-101288657
Coord C2 exon
chrX:101446212-101446338
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTTCTTACAGAAT
3' ss Score
11.7
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGTGGCCACCTGGATGGGGACTCTAAAGAAGTATCCCCTATTTTCACACAGTTCCTAGACTGTATCTGGCAATTAATGGAACAATTTCCATGTGCCTTTGAATTTAATGAAAATTTCCTGCTGGAAATTCATGACCATGTTTTCTCCTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAGAAGGATCGAGATGATCTGAG
Seq A exon
AATATATGAGAAAACCCATTCAGTGTGGCCTTTCTTGGTTCAGAGGAAACCAGACTTCAGGAACCCTCTCTATAAAGGCTTCACTATGTATGGGGTACTAAATCCTAGTACTGTGCCCTACAACATTCA
Seq C2 exon
GTTCTGGTGTGGGATGTATAACCGCTTTGACAAAGGGTTGCAGCCCAAGCAGAGTATGCTAGAGAGCCTCCTGGAAATTAAGAAGCAGAGATCAATGCTGGAGGCAGATGTGCACAAACTAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705-'11-18,'11-11,12-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.1=97.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGGATGGGGACTCTAA
R:
ATACTCTGCTTGGGCTGCAAC
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]