RnoEX6055669 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54848404-54853160:+
Coord C1 exon
chr16:54848404-54848604
Coord A exon
chr16:54851367-54851507
Coord C2 exon
chr16:54853034-54853160
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTTGAAATAACAGGAT
3' ss Score
5.39
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
ATATGGCAATTTAGACGGTGACCCAAAAGAAATCTCTCCAGTAATTGACCAGTTCATCGAGTGTGTCTGGCAGTTAATGGAACAGTTCCCTTGCGCCTTTGAGTTCAATGAGAGGTTTTTGATTCACATTCAACATCATGTTTACTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGACGAGAACTCAA
Seq A exon
GATTCAAGAAAGAACTTACTCTTTGTGGTCGAACCTGTGGAAGAATCGGGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATACAACTTCACATATAA
Seq C2 exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGCTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420-'26-25,'26-23,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.021 C2=0.349
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
PF093326=Mcm10=PU(7.4=20.8)
C2:
PF093326=Mcm10=FE(30.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGTTCCCTTGCGCCTTT
R:
AGGGACTCCAGTTCTTCCTCC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]