BtaEX6106718 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:19008507-19012519:+
Coord C1 exon
chr27:19008507-19008707
Coord A exon
chr27:19010141-19010281
Coord C2 exon
chr27:19012393-19012519
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCTTATTTTCTTTATAACAGAAT
3' ss Score
7.41
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATACGGCAACCTAGATGGTGATCCCAGAGAAATCTCTCCAGTTATAGACCAGTTCCTTGAGTGCGTCTGGCAGTTAATGGAACAGTTTCCCTGTGCCTTTGAGTTCAATGAGAGGTTTTTGATTCACATTCAACATCACATCTATTCCTGCCAGTTTGGGAACTTCCTATGTAATAGCCAGAAGGAGAGACAAGAACTCAA
Seq A exon
AATTCAAGAAAGAACATACTCTTTATGGGCTCACCTGTGGAAAAATCGGGCCGACTACTTGAATCCTCTGTTTAGAGCTGATCACAGTCAGACCCGGGGAGTCCTTCATCTCCCCACAGCGCCGTGCAACTTCATGTACAA
Seq C2 exon
GTTTTGGAATGGAATGTATAATCGCTTTGAGAAGGGACTGCAGCCTCGACAATCAGTCACAGATTACCTCATGGCCGTGAAGGAGGAGACTCAGCAGCTGGAGGAAGAACTTGAGGCCCTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372-'20-18,'20-16,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.302
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
PF093326=Mcm10=PU(7.9=22.9)
C2:
PF093326=Mcm10=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGTTCCTTGAGTGCGTC
R:
AGCTGCTGAGTCTCCTCCTTC
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]