GgaEX1037504 @ galGal4
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62734003-62737237:+
Coord C1 exon
chr4:62734003-62734203
Coord A exon
chr4:62735118-62735258
Coord C2 exon
chr4:62737111-62737237
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGACTATATTTTTTTCAGAAT
3' ss Score
8.35
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTATGGCAATTTAGATGGAGATCCAAAGGAGATATCCCCTGTTATTGACCAGTTCCTCGAGTGTGTCTGGCAGCTAATGGAACAGTTTCCTTGTGCCTTTGAGTTCAATGAGAGATTCTTGATCCACATACAGCACCACATCTATTCCTGCCAGTTTGGTAACTTCCTGTGTAACAGCCAGAAGGAGAGACGAGAGCTGAA
Seq A exon
AATCCAAGAACGAACATATTCACTGTGGGCTCATCTGTGGAAAAATCGTGCAGATTACCTGAATCCTTTGTACAGACCAGACCACAGGCAAATCTGGGGGACCCTGCACCCACAGATGGCTCCATGCAACTTCTTGTACAA
Seq C2 exon
ATTCTGGAGTGGTATGTACAACCGCTTTGAAAAAGGGCTGCATCCTCGACAGTCAGTCACTGATTATCTGATGGCAGTGAAGGAGGAGACTCAACAGCTGGAAGAAGAGCTGGCAGTCTTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641-'21-18,'21-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGTTCCTCGAGTGTGT
R:
GAGTCTCCTCCTTCACTGCCA
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]