MmuEX6035400 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41639625-41643710:-
Coord C1 exon
chr8:41643510-41643710
Coord A exon
chr8:41641130-41641270
Coord C2 exon
chr8:41639625-41639751
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTTGAAATAACAGGAT
3' ss Score
5.39
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATATGGCAACTTAGATGGTGACCCAAAAGAAATCTCTCCAGTAATCGACCAGTTCATTGAGTGTGTCTGGCAGCTAACGGAACAGTTCCCTTGCGCCTTTGAGTTCAACGAGAGGTTTCTGACTCACATTCAGCATCATGTTTATTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGGCGAGAACTCAA
Seq A exon
GATTCAAGAAAGAACCTACTCTTTGTGGTCCAACCTGTGGAAGAATCGAGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATGCAACTTCACCTATAA
Seq C2 exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGTTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'16-15,'16-13,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.021 C2=0.349
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
PF061568=DUF972=PU(1.2=2.1),PF093326=Mcm10=PU(8.0=22.9)
C2:
PF061568=DUF972=FE(51.9=100),PF093326=Mcm10=FE(30.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGCTAACGGAACAGTT
R:
CAGTTCTTCCTCCAGCTGCTG
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: