BtaEX6009217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26811788-26815846:-
Coord C1 exon
chr2:26815719-26815846
Coord A exon
chr2:26812895-26813030
Coord C2 exon
chr2:26811788-26811883
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTATTTTTTTTTTAGGGC
3' ss Score
11.04
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
AAATTACGAGGCCAAACTGAAGCTCTTTATGTACTAACAAAATGTAACAGTACTCGTTTTGAGTTTATATTTACGAATTTGGTTCCTGGAAGTCCTAGACTTTATACTTCTCTGATTGCAGTACACAG
Seq A exon
GGCATATGAAACTTCTAAAATGTATCGTGATTTTAAATTGAGAAGTGCTCTAATTCAAAATAAGCAACTAAGATTATTACCACAAGAAAATGTATATAATAAAATCAATGGAGTATGGAATTTATCAAGTGATCAG
Seq C2 exon
GGAAATTTAGGAACCTTTTTTATTACCAATGTGAGAATCGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGTATACCATATCTGCAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(12.5=100)
A:
PF072896=DUF1448=FE(13.4=100)
C2:
PF072896=DUF1448=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACGAGGCCAAACTGAAGCT
R:
AACTGTCATTCATATTTGCATGCCA
Band lengths:
194-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]