GgaEX6042429 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20139019-20141160:-
Coord C1 exon
chr7:20141033-20141160
Coord A exon
chr7:20140063-20140198
Coord C2 exon
chr7:20139019-20139114
Length
136 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTTTTACTTTTTCAGAGC
3' ss Score
9.42
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAATTACGGGGACAGACAGAAGCTCTGTATATATTGACTAAATGTAATAATACACGATTTGAGTTCATATTTACCAATGTTGTTCCTGGGAGTCCCAGACTCTTCACTTCAGTTATTGCTGTGCACAG
Seq A exon
AGCTTATGAAACTTCGAAAATGTATCGTGATCTGAAGCTGAGAAGTGCATTGATTCAGAACAAGCAACTGAGGCTGTTGCCACAAGAACAAATATATGATAAAATCAATGGAGTGTGGAATTTATCAAGTGACCAG
Seq C2 exon
GGAAATCTGGGAACGTTTTTTATTACTAATGTGAGAGTAGTTTGGCATGCAAATATGAATGACAGCTTTAATGTCAGCATACCATATCTACAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846-'9-8,'9-7,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(12.5=100)
A:
PF072896=DUF1448=FE(13.4=100)
C2:
PF072896=DUF1448=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTACGGGGACAGACAGAAGC
R:
TAGATATGGTATGCTGACATTAAAGC
Band lengths:
218-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]