BtaEX6009680 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004267 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:38109972-38112887:+
Coord C1 exon
chr2:38109972-38110123
Coord A exon
chr2:38112530-38112625
Coord C2 exon
chr2:38112702-38112887
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTAAATGTCCTATAGGTT
3' ss Score
9
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AACAGGAGTTATCAGAACAATGGTGCACATATCTTAAAAATGTAATAAATCCTATTCAGCAATTGAGAGAAGATCTAAAATACAGACAGCATCACATTTCACAGTATTCACACTCACACAGTGAATCTAACTCTATGAAAGTATTGGAAGAG
Seq A exon
GTTGACTTCGTGAAGAAACAATTGAAAGCTGTCTATGAACAACTTAGGCTAGAGCAACAGGAAATAGAAAATTATCTTTCAGACTGGAGCATGAAA
Seq C2 exon
ATATTAGATCATTCTTCAGAAGAAAGAAGTAACCTGCTTAGTCAACTGCCCATGGAATTAGAAACTTTGGAATGTCCATACCCTGACTTGAAATCTTCAATCCTTAATGAATTCTATAACTTTACAGAGAAATATCAAAAGAAACTTCAAGATTTTGATCTGCAGTTAGAAGACATATACAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004267-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACAGCATCACATTTCACAGT
R:
AGATTTCAAGTCAGGGTATGGACA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]