GgaEX6043367 @ galGal4
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr7:35843117-35843917:-
Coord C1 exon
chr7:35843754-35843917
Coord A exon
chr7:35843386-35843481
Coord C2 exon
chr7:35843117-35843298
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAATGTATTTCATGAAATAGATT
3' ss Score
2.82
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
AGCATAAATTGTCACAGGAGCGGGATGCTTACCAAACAGATACTGTGGCTCCTATCTGGCAACTAAGAGAGAATTTGAAATTCTGGCTGACTGAAATGCAGCATTATGTCACAGAAGACTCATCTCTGAGAAACAAGTTCAGTCTAGCTGAGAAGTTACAGCAG
Seq A exon
ATTGAATCTGTGAAGAAAGAATGGAAAACAAATTTGGAATTTCTTAACCTTGAAAGTCTGGCTTTGGAAAGAGAGCTTCAAGACTACAAAATAGAA
Seq C2 exon
GCCATAGTGAATGGTTTTGAAGAGAAAAATGGACTTTTCCATGAAGTTCCTTCAGCTCTACTGTCTTTGGAGTTCCCTTACCCAGACTTGAGGAGCTTTGTTATTAATGAATACCGTAAGCTTGCAAATGAATACTGGTCTAAGCTGCAAGAGATTGATCAACAGCTAAACGTCATATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'7-7,'7-5,8-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGCTGACTGAAATGCA
R:
AGTCTGGGTAAGGGAACTCCA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]