BtaEX6009801 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44691914-44692965:+
Coord C1 exon
chr2:44691914-44692027
Coord A exon
chr2:44692340-44692537
Coord C2 exon
chr2:44692861-44692965
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGGTTACGTTATCTCCACAGCGC
3' ss Score
8.92
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ATCAAATACCGCGAAGAATATGAGAAGTTCAAAGCTCTTTACACTTTACCCAGAAGTGTTGAAGATGATCCGAACACAGCACGGTGCCTCCGAGTTGGCAAGTTTAACATCGAC
Seq A exon
CGCCTGTACAGATCTGTTTATGAGAAGAACAAGATGAAAATCCACATAGTGCCTGACATGGTAGAGATGGTTACCGCTAAGGATTCTCAGAAGAAAGTCAGTGAGATCGACTACCGCCTTCACCTCCACGAGTGGATTTGCCACCCCGACTTGCAAGTCAACAGTCACGTCAGGAAGGTCACAGACCAGATCAGTGAC
Seq C2 exon
ATTGTGTACAAGGATGACCTCACCTGGCTGAAAGGCATTGGTTGCTACGTCTGGGACACTCCTGAGATTCTCCACGCCAAGCATGCTTACGATCTACGCAACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'110-117,'110-116,112-117=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9)
A:
PF0088013=Nebulin=PU(50.0=19.7)
C2:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAATACCGCGAAGAATATGAGA
R:
TCGTTGCGTAGATCGTAAGCA
Band lengths:
218-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]