RnoEX6016838 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37713922-37715144:-
Coord C1 exon
chr3:37715031-37715144
Coord A exon
chr3:37714350-37714547
Coord C2 exon
chr3:37713922-37714026
Length
198 bp
Sequences
Splice sites
3' ss Seq
GGTCGTAATGGCTTTCACAGCGC
3' ss Score
4.28
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
ATCAAATACCGAGAAGAATATGAGAAGTTCAAAGCCCTTTACACGTTACCGAAAAGTGTTGACGACGATCCGAACACAGCACGGTGTCTCCGAGTGGGCAAGCTTAATATCGAT
Seq A exon
CGCTTGTACAGGTCAGTGTACGAGAAGAACAAGATGAAAATCAACATCGTGCCCGACATGGTGGAGATGGTGACGGCCAAGGACTCTCAGAAGAAAGTCAGCGAGATCGACTACCGCCTGCACCTTCATGAGTGGATTTGCCACCCTGACTTACAAGTCAACAGTCACGTCAGAAAAGTGACAGACCAGATCAGCGAC
Seq C2 exon
ATTGTGTACAAGGATGACCTCACCTGGCTGAAGGGCATTGGTTGCTACGTCTGGGACACTCCTGAAATTCTCCATGCAAAACATGCTTATGATCTACGCAACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'107-115,'107-114,108-115=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=28.9)
A:
PF0088013=Nebulin=PU(50.0=19.7)
C2:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGAAGAATATGAGAAGTTCA
R:
TCGTTGCGTAGATCATAAGCATGT
Band lengths:
211-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]