BtaEX6010449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84858610-84864000:-
Coord C1 exon
chr2:84863654-84864000
Coord A exon
chr2:84861062-84861242
Coord C2 exon
chr2:84858610-84858795
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCCAATTTTACTTTTGGCAGAGT
3' ss Score
5.01
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACATTACAGTGGTAAAATCCATGAAGAGTCCTCCCGCTGGTGTCAAGCTTGTAATGGAAGCTATATGCATCTTGAAAGGCATCAAAGCCGACAAAATCCCTGACCCAACAGGTACAGGGAAAAAGATTGAGGATTTCTGGGGTCCTGCCAAAAGACTTCTGGGTGACATTCGATTTCTGCAGTCACTTCATGAATATGACAAGGACAATATTCCTCCAGCTTACATGAACATCATAAGAAAAAATTATATTCCAAATCCAGATTTTGTTCCAGAAAAGATAAGAAATGCTTCCACAGCAGCCGAAGGTCTGTGCAAATGGGTCATAGCAATGGATTCATATGATAA
Seq A exon
AGTGGCAAAAATTGTAGCTCCCAAAAAGATAAAACTGGCTGCAGCTGAAGGGGAGCTTAAAATTGCTATGGATGGTCTCAAAAAGAAGCAGGCAGCACTTCGGGATGTTCAGGACAAGCTGGCCAGGCTTCAGGACACACTCGAACTAAATAAACAAAAGAAAGCTGACTTAGAAAACCAG
Seq C2 exon
GTTGACCTGTGCAGCAAAAAGCTAGAACGAGCTGAACAATTGATCGGAGGCCTTGGGGGTGAGAAAACACGATGGAGCCAGACAGCTCTGGAGTTGGGGCAGCTGTACATCAACCTGACGGGGGACATCCTTGTTTCTTCAGGGGTCGTGGCTTACCTTGGAGCCTTCACATCTAACTATCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'45-49,'45-48,46-49=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(32.8=100)
A:
PF127772=MT=FE(17.1=100)
C2:
PF127772=MT=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAAGACTTCTGGGTGACA
R:
CCAAGGCCTCCGATCAATTGT
Band lengths:
256-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]