DreEX6036420 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25176696-25180359:-
Coord C1 exon
chr9:25180013-25180359
Coord A exon
chr9:25178793-25178973
Coord C2 exon
chr9:25176696-25176881
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTTGTCTTTGACAGAGT
3' ss Score
8.69
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GATATAACTCTAGTTAAAGCCATGAAAAATCCTCCAGCTGGTGTCAAACTGGTGATGGAAGCCATCTGCATTCTTAAAGGCATAAAACCAGACCGAATCCCAGACCCTTCAGGTTCCGGCAAGAAGGTTGAAGACTACTGGGGCCCAGCAAAGAAACTATTAGGAGATATGAAGTTTCTCCAGAGCCTTCATGAGTACAATAAAGACAATATTCCAGTCAGCTACATGAGCATTATTCGGAATAAATACATCACCAACCCAGACTTTGTTCCAGAGAAGATCCGCACGGCCTCCGCTGCTGCAGAGGGGCTCTGTAAATGGGTCTGTGCCATGGACTCTTATGATAA
Seq A exon
AGTGGCAAAGGTAGTGGCCCCCAAAAAAGAAAAGTTGGCACATGCTGAAGAGAAGCTGAAGGTGGCCATGGAGAGCCTCCGGAAGAAACAGGCTGCTTTGAAGGAGGTCCAGGACAAACTGGCAAAACTGCAGGAGACCCTGGAAACCAACAAGAACAAAAAGGCTGACCTTGAGAATCAG
Seq C2 exon
GTGGAGATGTGCAGTAAAAAGCTAGAGAGAGCAGAGCAGCTGATTGGTGGGTTAGGAGGAGAGAAGTCCCGCTGGAGTGAGACAGCATTTAACTTAGGTCAACTCTACAACAACCTTACTGGAGACATTCTCATCTCTGCTGCCATAGTGGCCTACCTGGGCGCTTTTACTTCCAGCTTTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'43-44,'43-43,44-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(32.8=100)
A:
PF127772=MT=FE(17.1=100)
C2:
PF127772=MT=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCCAGCAAAGAAACTAT
R:
CCAATCAGCTGCTCTGCTCTC
Band lengths:
255-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]