MmuEX0015024 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46298825-46306803:+
Coord C1 exon
chr1:46298825-46299171
Coord A exon
chr1:46300100-46300280
Coord C2 exon
chr1:46306618-46306803
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCAACTTGATTGTTTTGTAGAGT
3' ss Score
5.71
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATATCACAGTTGTGAAGTCCATGAAGAGTCCTCCTGCTGGCGTCAAGCTTGTCATGGAAGCTATCTGCATATTGAAAGGTATCAAAGCCGACAAAATCCCTGACCCAACAGGTTCAGGGAAGAAAATTGAGGATTTCTGGGGCCCTGCTAAGAGACTTCTTGGTGACATAAGGTTTCTGCAGTCACTTCATGAGTATGACAAGGACAATATTCCTCCTGCTTATATGAATATCATAAGGAAGAGTTATATCCCCAACCCAGACTTTGTTCCAGAGAAGATCCGGAATGCTTCAACAGCTGCTGAGGGTCTGTGCAAGTGGGTCATCGCAATGGACTCCTATGACAA
Seq A exon
AGTGGCAAAAATTGTAGCTCCCAAAAAGATAAAGCTGGCTGCAGCCGAAGGGAAGCTGAGGATTGCTATGGAAGGCCTTAGAAAGAAGCAGGCTGCCCTGTATGAGGTTCAGGACAAGTTGGCCAAACTCCAAGACACACTTGAGTTGAATAAGCAGAAGAAAGCAGACTTGGAAAACCAG
Seq C2 exon
GTTGACTTGTGCAGCAAAAAGCTAGAACGCGCAGAGCAGCTGATCGGGGGCCTGGGAGGTGAGAAAACCCGATGGAGCAACTCCGCGCTGGAGCTTGGGCATCTGTACATCAACCTGACGGGAGATATCCTCATCTCCTCAGGGGTTGTCGCCTACCTGGGAGCCTTTACATCTAACTACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'48-45,'48-44,49-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(32.9=100)
A:
PF127772=MT=FE(17.1=100)
C2:
PF127772=MT=PD(19.7=59.0),PF127812=AAA_9=PU(12.6=24.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCCAGACTTTGTTCC
R:
ACAACCCCTGAGGAGATGAGG
Band lengths:
245-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: