BtaEX6013765 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6635747-6642107:-
Coord C1 exon
chr3:6642003-6642107
Coord A exon
chr3:6641212-6641268
Coord C2 exon
chr3:6635747-6635845
Length
57 bp
Sequences
Splice sites
3' ss Seq
TACTGTTTTCTTTTTCTCAGTTA
3' ss Score
7.98
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGTCTGTATTCCAGTGTAGTGTGCCCAGGTACGATGCTGACCAATTTGACATATGGAATTCTACCTCCCTTTGTGTGGATGTTAATCATGCCAATCATATGGCTG
Seq A exon
TTACGCTTTTTTGCAAACGCTTTCACGTTGACACCTCACAATGGAACAGAAGCACTG
Seq C2 exon
GTCTGGCTTTTCCACCAAAAGCCCGAGTCTCTCAATCCTCTGGTGAAATATCTGAGTGCCACCACTGGCTTTGGAAGCAATTATGTGACGTCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGTGTGCCCAGGTACGAT
R:
AGAGGATTGAGAGACTCGGGC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]