MmuEX0023306 @ mm10
Exon Skipping
Gene
ENSMUSG00000026675 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
Coordinates
chr1:169955935-169959791:-
Coord C1 exon
chr1:169959687-169959791
Coord A exon
chr1:169959423-169959479
Coord C2 exon
chr1:169955935-169956033
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTCTTTTCATCAGCTT
3' ss Score
7.72
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GGTCTGTATTCCAGTGTGATGTGCCCAGGCGTCGTGATGACCAATATGACGTATGGAATTTTGCCTCCCTTTATCTGGACGTTGCTCCTACCCATAATGTGGCTC
Seq A exon
CTTCGCTTTTTTGTAAATGCGCTCACTGTGACACCGTACAACGGAGCAGAGGCCCTG
Seq C2 exon
GTGTGGCTCTTCCACCAAAAACCGGAGTCTCTTAATCCTCTGACCAAATACGCGAGCGCCACCTCGGGATTTGGGACTAATTACGTCACGGGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026675_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCCTTTATCTGGACGT
R:
GCCCGTGACGTAATTAGTCCC
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types