BtaEX6014735 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007517 | CHRNB2
Description
cholinergic receptor, nicotinic, beta 2 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1962]
Coordinates
chr3:16063517-16065811:-
Coord C1 exon
chr3:16065767-16065811
Coord A exon
chr3:16065243-16065352
Coord C2 exon
chr3:16063517-16064486
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTCCCTTTCCCAGGAG
3' ss Score
10.8
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CATGAGCGGGAGCAGATCATGACCACCAATGTCTGGCTGACTCAG
Seq A exon
GAGTGGGAGGATTATCGCCTCACCTGGAAGCCTGAGGAATTTGACAACATGAAGAAAGTTCGGCTCCCTTCCAAACACATCTGGCTCCCAGATGTGGTCCTATACAACAA
Seq C2 exon
TGCCGACGGCATGTACGAGGTGTCCTTCTATTCCAATGCGGTGGTCTCCTATGATGGCAGCATCTTCTGGCTGCCGCCTGCCATCTACAAGAGCGCATGCAAGATCGAGGTAAAGCACTTCCCGTTTGACCAGCAGAACTGCACCATGAAGTTCCGCTCGTGGACCTACGACCGCACTGAGATCGACCTGGTGCTCAAGAGTGATGTGGCCAACCTGGACGACTTCACACCCAGCGGCGAGTGGGACATAGTGGCGCTGCCCGGCCGACGCAACGAGAACCCGGATGACTCCACTTACGTGGACATCACATACGACTTCATCATCCGTCGCAAGCCACTCTTCTACACCATCAATCTCATCATCCCCTGCGTCCTCATCACCTCTCTAGCCATCCTCGTCTTCTACCTGCCGTCTGACTGCGGTGAGAAGATGACGCTCTGCATCTCCGTGCTGCTGGCGCTTACAGTCTTCCTGCTGCTCATCTCTAAGATCGTGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007517-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.5=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.4=34.6),PF0293211=Neur_chan_memb=PU(86.1=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAGATCATGACCACCA
R:
TTGGCCACATCACTCTTGAGC
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]