RnoEX6010345 @ rn6
Exon Skipping
Gene
ENSRNOG00000020778 | Chrnb2
Description
cholinergic receptor nicotinic beta 2 subunit [Source:RGD Symbol;Acc:2350]
Coordinates
chr2:189092902-189095236:-
Coord C1 exon
chr2:189095192-189095236
Coord A exon
chr2:189094610-189094719
Coord C2 exon
chr2:189092902-189093871
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCTCCCTTTCCCAGGAG
3' ss Score
10.97
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CACGAGCGGGAGCAGATCATGACCACCAATGTCTGGCTGACCCAG
Seq A exon
GAGTGGGAAGATTACCGCCTCACATGGAAGCCTGAGGACTTCGACAATATGAAGAAAGTCCGGCTCCCTTCCAAACACATCTGGCTCCCAGATGTGGTTCTATACAACAA
Seq C2 exon
TGCTGACGGCATGTACGAAGTCTCCTTCTATTCCAATGCTGTGGTCTCCTATGATGGCAGCATCTTTTGGCTACCACCTGCCATCTACAAGAGTGCATGCAAGATTGAGGTGAAGCACTTCCCATTTGACCAGCAGAATTGCACCATGAAGTTTCGCTCATGGACCTACGACCGTACTGAGATTGACCTGGTGCTCAAAAGTGATGTGGCCAGTCTGGATGACTTCACACCCAGCGGGGAGTGGGACATCATCGCACTGCCAGGCCGACGCAACGAGAACCCAGACGACTCCACCTATGTGGACATCACCTATGACTTCATCATTCGTCGCAAACCACTCTTCTACACTATCAACCTCATCATCCCCTGCGTACTCATCACCTCGCTGGCCATCCTGGTCTTCTACCTGCCCTCAGACTGTGGTGAAAAGATGACACTTTGTATTTCTGTGCTGCTAGCACTCACGGTGTTCCTGCTGCTCATCTCCAAGATTGTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020778-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.5=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.4=34.6),PF0293211=Neur_chan_memb=PU(86.1=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGATCATGACCACCAA
R:
CATCCAGACTGGCCACATCAC
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]