BtaEX6016797 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57825946-57830789:+
Coord C1 exon
chr3:57825946-57826114
Coord A exon
chr3:57827950-57828082
Coord C2 exon
chr3:57830730-57830789
Length
133 bp
Sequences
Splice sites
3' ss Seq
TAAATTTTCTTTGTGCATAGCCT
3' ss Score
6.43
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTTTCAGCTTATGTGGAGAACTTGCTGTGGAAGCCACCGATAAATCCATTTAATTTATGGAGGAGACTGCAAATGATGGAAGTCATTCAGAAGAACTCTTTTCCCATTTTGAAAGTAGATCAGAGAAAGAAGGTTTACCACAGGATGCCAGTGAAAGTCATCTCAGCTG
Seq A exon
CCTAAAGCAGGACATCCAAAATGAGAAGACCGAATTGGAAGCATTGTTTAAGGAAGCCGAGTTAGCAACTTGTTCTGCAGAATTACTTCTGCCATTGTTTAAGGACACCATTGAAGAGATTAGTTTTGAAAAT
Seq C2 exon
AGAGGGGAAAGTTTATCCAACTTGTTAGAGAAACTAACTGATAATGAAAGTGAAAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907-'14-6,'14-4,15-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.044 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]