GgaEX1041156 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14935184-14936694:+
Coord C1 exon
chr8:14935184-14935344
Coord A exon
chr8:14935586-14935709
Coord C2 exon
chr8:14936560-14936694
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTGTATGTGGCCAGGGA
3' ss Score
4.96
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGGAAACTTGGAAAAAAATGTGGGGGCCACGGCCTGATAAACATGGGATCAAGATTACAGAACTGTTCCCACTGCTTAAAGGAGGCTCACCAAAAAATCACCTACCACAAAACTTGAATGGAAGCGTAGAGAGAAGATGCGCTTCAGACAAAGAGAGAAG
Seq A exon
GGAGGAGGAAAATGCCTCTCATGAAAATGGTGCTTCACAGGAGATTTTTGAAGCAGAAATGGCAATTAATTCAGCAGAGAACTTGTTGCCAACTTTTAAAGACATACTTGGCAGAATGACAAAT
Seq C2 exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.729 A=0.476 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGCCTGATAAACATGGG
R:
AAGCCATAACAATCTTTTGGTGGT
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]