GgaEX1041155 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14934285-14936694:+
Coord C1 exon
chr8:14934285-14934444
Coord A exon
chr8:14935184-14935344
Coord C2 exon
chr8:14936560-14936694
Length
161 bp
Sequences
Splice sites
3' ss Seq
AGCTCGTATCGACTGTGCAGGAG
3' ss Score
3.83
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGAAAAAAGAAGTGTGGTACCTGTTACACCTCGAGAAGAGGGAAAACTCTGCTCACTGATTCTGCCATATAAAAATGATTGTCACAGAACTACAAAAGCTGCCCAAGGTGGAAAATATTTTACCGAGCTAAGCAAAGAATCTGACGACCCAGAACAACAG
Seq A exon
GAGGAAACTTGGAAAAAAATGTGGGGGCCACGGCCTGATAAACATGGGATCAAGATTACAGAACTGTTCCCACTGCTTAAAGGAGGCTCACCAAAAAATCACCTACCACAAAACTTGAATGGAAGCGTAGAGAGAAGATGCGCTTCAGACAAAGAGAGAAG
Seq C2 exon
CAGGTTTGTAAACCTTCTACATCAGAAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.729 C2=0.022
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTACCTGTTACACCTCGA
R:
AGCCATAACAATCTTTTGGTGGT
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]